Evidence map›Paper›PMID 31040352›Full record

ArticleScientific reports2019

An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation.

Karunakaran Kalesh, Saulius Lukauskas, Aaron J Borg, Ambrosius P Snijders, Vinay Ayyappan, Anthony K L Leung, Dorian O Haskard, Peter A DiMaggio

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  9. Article
  10. Functionalised Cofactor Mimics for Interactome Discovery and Beyond.Angewandte Chemie (International ed. in English) · 2022
    Review
  11. Intracellular mono-ADP-ribosyltransferases at the host-virus interphase.Cellular and molecular life sciences : CMLS · 2022
    Review
  12. Profiling of the ADP-Ribosylome in Living Cells.Angewandte Chemie (International ed. in English) · 2022
    Article
  13. Article
  14. Article
  15. Review
  16. A Bifunctional NADACS chemical biology · 2021
    Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

Karunakaran KaleshDepartment of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Saulius LukauskasDepartment of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Aaron J BorgMass Spectrometry Proteomics Platform, The Francis Crick Institute, London, NW1 1AT, UK.
Ambrosius P SnijdersMass Spectrometry Proteomics Platform, The Francis Crick Institute, London, NW1 1AT, UK.ORCID http://orcid.org/0000-0002-5416-8592
Vinay AyyappanDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, 21205, USA.
Anthony K L LeungDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, 21205, USA.ORCID http://orcid.org/0000-0001-5569-4036
Dorian O HaskardFaculty of Medicine, National Heart & Lung Institute, Vascular Science Section, Hammersmith Campus, London, UK.
Peter A DiMaggioDepartment of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK. p.dimaggio@imperial.ac.uk.ORCID http://orcid.org/0000-0003-1996-0813
Johns Hopkins University · USThe Francis Crick Institute · GBDurham University · GBHammersmith Hospital · GBHelmholtz Zentrum München · DEImperial College London · GB

Funding

Biotechnology and Biological Sciences Research Council 1377205Medical Research Council FC001999Wellcome Trust FC001999
6 · The paper itself

Abstract

ADP-ribosylation is integral to a diverse range of cellular processes such as DNA repair, chromatin regulation and RNA processing. However, proteome-wide investigation of its cellular functions has been limited due to numerous technical challenges including the complexity of the poly(ADP-ribose) (PAR) chains, low abundance of the modification and lack of sensitive enrichment methods. We herein show that an adenosine analogue with a terminal alkyne functionality at position 2 of the adenine (2-alkyne adenosine or 2YnAd) is suitable for selective enrichment, fluorescence detection and mass spectrometry proteomics analysis of the candidate ADP-ribosylome in mammalian cells. Although similar labelling profiles were observed via fluorescence imaging for 2YnAd and 6YnAd, a previously reported clickable NAD

Indexed as

ADP-RibosylationProtein Processing, Post-TranslationalProteomeProteomicsAdenosine Diphosphate RiboseCell Line, TumorHumansMass SpectrometryPoly(ADP-ribose) Polymerase InhibitorsAdenosine Diphosphate RibosePoly(ADP-ribose) Polymerase InhibitorsProteome

Identifiers

PMID31040352
PMCPMC6491589
OpenAlexW2920177871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.