Evidence map›Paper›PMID 31040281›Full record

ArticleNature communications2019

A binding cooperativity switch driven by synergistic structural swelling of an osmo-regulatory protein pair.

Abhishek Narayan, Soundhararajan Gopi, David Fushman, Athi N Naganathan

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Abhishek NarayanDepartment of Biotechnology, Bhupat & Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, 600036, India.ORCID http://orcid.org/0000-0001-5390-2380
Soundhararajan GopiDepartment of Biotechnology, Bhupat & Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, 600036, India.ORCID http://orcid.org/0000-0002-7511-2571
David FushmanCenter for Biomolecular Structure and Organization, Department of Chemistry & Biochemistry, University of Maryland, College Park, MD, 20742, USA.
Athi N NaganathanDepartment of Biotechnology, Bhupat & Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, 600036, India. athi@iitm.ac.in.ORCID http://orcid.org/0000-0002-1655-7802
Indian Institute of Technology Madras · INUniversity of Maryland, College Park · US

Funding

DBT India Alliance (Wellcome Trust/DBT India Alliance) IA/I/15/1/501837DBT-Wellcome Trust India Alliance IA/I/15/1/501837Department of Biotechnology, Ministry of Science and Technology (DBT) BT/06/IYBA/2012-14Indian National Science Academy (INSA) SP/YSP/132/2016/068National Science Foundation (NSF) DBI1040158Wellcome Trust
6 · The paper itself

Abstract

Uropathogenic E. coli experience a wide range of osmolarity conditions before and after successful infection. Stress-responsive regulatory proteins in bacteria, particularly proteins of the Hha family and H-NS, a transcription repressor, sense such osmolarity changes and regulate transcription through unknown mechanisms. Here we use an array of experimental probes complemented by molecular simulations to show that Cnu, a member of the Hha protein family, acts as an exquisite molecular sensor of solvent ionic strength. The osmosensory behavior of Cnu involves a fine-tuned modulation of disorder in the fourth helix and the three-dimensional structure in a graded manner. Order-disorder transitions in H-NS act synergistically with molecular swelling of Cnu contributing to a salt-driven switch in binding cooperativity. Thus, sensitivity to ambient conditions can be imprinted at the molecular level by tuning not just the degree of order in the protein conformational ensemble but also through population redistributions of higher-order molecular complexes.

Indexed as

Bacterial ProteinsEscherichia coliEscherichia coli ProteinsProtein BindingProtein ConformationTranscription FactorsBacterial ProteinsEscherichia coli ProteinsTranscription Factors

Identifiers

PMID31040281
PMCPMC6491433
OpenAlexW2943273363

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.