Evidence map›Paper›PMID 31040280›Full record

ArticleNature communications2019

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion.

Langqing Liu, Mirte Bosse, Hendrik-Jan Megens, Laurent A F Frantz, Young-Lim Lee, Evan K Irving-Pease, Goutam Narayan, Martien A M Groenen, Ole Madsen

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

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  8. Investigation ofAnimals : an open access journal from MDPI · 2023
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  16. Radiation and hybridization underpin the spread of the fire ant social supergene.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Langqing LiuAnimal Breeding and Genomics, Wageningen University & Research, 6708PB, Wageningen, the Netherlands. langqing.liu@wur.nl.ORCID http://orcid.org/0000-0003-4868-087X
Mirte BosseAnimal Breeding and Genomics, Wageningen University & Research, 6708PB, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0003-2433-2483
Hendrik-Jan MegensAnimal Breeding and Genomics, Wageningen University & Research, 6708PB, Wageningen, the Netherlands.
Laurent A F FrantzSchool of Biological and Chemical Sciences, Queen Mary University of London, E1 4NS, London, United Kingdom.
Young-Lim LeeAnimal Breeding and Genomics, Wageningen University & Research, 6708PB, Wageningen, the Netherlands.
Evan K Irving-PeasePalaeogenomics and Bioarcheology Research Network, Research Laboratory for Archeology and History of Art, University of Oxford, Oxford, OX1 3QY, United Kingdom.ORCID http://orcid.org/0000-0003-1940-2192
Goutam NarayanDurrell Wildlife Conservation Trust, Les Augrès Manor, Jersey, JE3 5BP, Channel Islands, United Kingdom.ORCID http://orcid.org/0000-0003-1224-2958
Martien A M GroenenAnimal Breeding and Genomics, Wageningen University & Research, 6708PB, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0003-0484-4545
Ole MadsenAnimal Breeding and Genomics, Wageningen University & Research, 6708PB, Wageningen, the Netherlands. ole.maden@wur.nl.

Funding

EC | EC Seventh Framework Programm | FP7 Ideas: European Research Council (FP7-IDEAS-ERC - Specific Programme: "Ideas" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013)) ERC-2009-AdG: 249894
6 · The paper itself

Abstract

Wild boar (Sus scrofa) drastically colonized mainland Eurasia and North Africa, most likely from East Asia during the Plio-Pleistocene (2-1Mya). In recent studies, based on genome-wide information, it was hypothesized that wild boar did not replace the species it encountered, but instead exchanged genetic materials with them through admixture. The highly endangered pygmy hog (Porcula salvania) is the only suid species in mainland Eurasia known to have outlived this expansion, and therefore provides a unique opportunity to test this hybridization hypothesis. Analyses of pygmy hog genomes indicate that despite large phylogenetic divergence (~2 My), wild boar and pygmy hog did indeed interbreed as the former expanded across Eurasia. In addition, we also assess the taxonomic placement of the donor of another introgression, pertaining to a now-extinct species with a deep phylogenetic placement in the Suidae tree. Altogether, our analyses indicate that the rapid spread of wild boar was facilitated by inter-specific/inter-generic admixtures.

Indexed as

Africa, NorthernAnimalsDNA, MitochondrialGenomicsPhylogenySequence Analysis, DNASus scrofaSwineDNA, Mitochondrial

Identifiers

PMID31040280
PMCPMC6491599

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.