Evidence map›Paper›PMID 31040182›Full record

ArticleThe Journal of biological chemistry2019

The HIRA histone chaperone complex subunit UBN1 harbors H3/H4- and DNA-binding activity.

M Daniel Ricketts, Nirmalya Dasgupta, Jiayi Fan, Joseph Han, Morgan Gerace, Yong Tang, Ben E Black, Peter D Adams, Ronen Marmorstein

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

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  11. Review
  12. Review
  13. The Histone Chaperone Network Is Highly Conserved inInternational journal of molecular sciences · 2023
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

M Daniel RickettsFrom the Department of Biochemistry and Biophysics and.
Nirmalya Dasguptathe Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037.
Jiayi FanFrom the Department of Biochemistry and Biophysics and.
Joseph HanFrom the Department of Biochemistry and Biophysics and.
Morgan GeraceFrom the Department of Biochemistry and Biophysics and.
Yong Tangthe Wistar Institute, Philadelphia, Pennsylvania 19104, and.
Ben E BlackFrom the Department of Biochemistry and Biophysics and.
Peter D Adamsthe Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037.
Ronen MarmorsteinFrom the Department of Biochemistry and Biophysics and marmor@upenn.edu.
University of Pennsylvania · USDiscovery Institute · USThe Wistar Institute · USUPMC Hillman Cancer Center · US

Funding

STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI GARCIA, BENJAMIN A · 2008 to 2022
$28.3M
Centromere Identity and FunctionR01GM082989 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BLACK, BEN E. · 2008 to 2018
$3.6M
NIA NIH HHS P01 AG031862NIGMS NIH HHS R01 GM082989
6 · The paper itself

Abstract

The HIRA histone chaperone complex is composed of the proteins HIRA, UBN1, and CABIN1 and cooperates with the histone chaperone ASF1a to specifically bind and deposit H3.3/H4 into chromatin. We recently reported that the UBN1 Hpc2-related domain (HRD) specifically binds to H3.3/H4 over H3.1/H4. However, the mechanism for HIRA complex deposition of H3.3/H4 into nucleosomes remains unclear. Here, we characterize a central region of UBN1 (UBN1 middle domain) that is evolutionarily conserved and predicted to have helical secondary structure. We report that the UBN1 middle domain has dimer formation activity and binds to H3/H4 in a manner that does not discriminate between H3.1 and H3.3. We additionally identify a nearby DNA-binding domain in UBN1, located between the UBN1 HRD and middle domain, which binds DNA through electrostatic contacts involving several conserved lysine residues. Together, these observations suggest a mechanism for HIRA-mediated H3.3/H4 deposition whereby UBN1 associates with DNA and dimerizes to mediate formation of an (H3.3/H4)

Indexed as

Amino Acid SequenceChromatinDimerizationDNAHistonesHumansNuclear ProteinsProtein BindingProtein DomainsProtein Structure, SecondarySequence AlignmentStatic ElectricityTranscription FactorsChromatinDNAHistonesNuclear ProteinsTranscription FactorsUBN1 protein, humanchromatinDNA-binding proteinepigeneticshistonehistone chaperone

Identifiers

PMID31040182
PMCPMC6556585
OpenAlexW2942888645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.