Evidence map›Paper›PMID 31040006›Full record

ArticleClinical radiology2020

Open access image repositories: high-quality data to enable machine learning research.

F Prior, J Almeida, P Kathiravelu, T Kurc, K Smith, T J Fitzgerald, J Saltz

Open access · greenAbstract read
In one paragraph

Article in Clinical radiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Journal of medical imaging (Bellingham, Wash.) · 2023
    Article
  8. Review
  9. Article
  10. Quantitative approaches in clinical reproductive endocrinology.Current opinion in endocrine and metabolic research · 2022
    Review
  11. Article
  12. Review
  13. Deep Learning-Based Image Reconstruction for Different Medical Imaging Modalities.Computational and mathematical methods in medicine · 2022
    Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Artificial intelligence and machine learning for medical imaging: A technology review.Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

F PriorDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, 4301 W. Markham St, Little Rock, AR 72205, USA. Electronic address: fwprior@uams.edu.
J AlmeidaNational Institutes of Health, National Cancer Institute, 9609 Medical Center Drive, Bethesda, MD 20892, USA.
P KathiraveluDepartment of Biomedical Informatics, Emory University, 101 Woodruff Circle, #4104, Atlanta, GA 30322, USA.
T KurcDepartment of Biomedical Informatics, Stoney Brook University, Health Science Center Level 3, Room 043, Stony Brook, NY 11794, USA.
K SmithDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, 4301 W. Markham St, Little Rock, AR 72205, USA.
T J FitzgeraldDepartment of Radiation Oncology, University of Massachusetts Medical School, Worcester, MA 01655, USA.
J SaltzDepartment of Biomedical Informatics, Stoney Brook University, Health Science Center Level 3, Room 043, Stony Brook, NY 11794, USA.
Stony Brook University · USUniversity of Arkansas for Medical Sciences · USEmory University · USNational Institutes of Health · USUniversity of Massachusetts Chan Medical School · US

Funding

TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision MedicineU24CA215109 · NCI · UNIV OF ARKANSAS FOR MED SCIS · PI BANERJEE, IMON, PRIOR, FRED WILLIAM · 2017 to 2021
$8.5M
Tools to Analyze Morphology and Spatially Mapped Molecular DataU24CA180924 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI SALTZ, JOEL H. · 2014 to 2019
$3.6M
Resources for development and validation of Radiomic analyses & Adaptive TherapyU01CA187013 · NCI · WASHINGTON UNIVERSITY · PI PRIOR, FRED WILLIAM, SHARMA, ASHISH · 2014 to 2018
$2.6M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS U01 CA187013NCI NIH HHS U24 CA180924NCI NIH HHS U24 CA215109
6 · The paper itself

Abstract

Originally motivated by the need for research reproducibility and data reuse, large-scale, open access information repositories have become key resources for training and testing of advanced machine learning applications in biomedical and clinical research. To be of value, such repositories must provide large, high-quality data sets, where quality is defined as minimising variance due to data collection protocols and data misrepresentations. Curation is the key to quality. We have constructed a large public access image repository, The Cancer Imaging Archive, dedicated to the promotion of open science to advance the global effort to diagnose and treat cancer. Drawing on this experience and our experience in applying machine learning techniques to the analysis of radiology and pathology image data, we will review the requirements placed on such information repositories by state-of-the-art machine learning applications and how these requirements can be met.

Indexed as

Access to InformationBiomedical ResearchMachine LearningDiagnosis, Computer-AssistedHumansInformation Storage and RetrievalNeoplasmsRadiologyRadiology Information SystemsUnited States

Identifiers

PMID31040006
PMCPMC6815686
OpenAlexW2940702592

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.