Evidence map›Paper›PMID 31039818›Full record

ArticleActa neuropathologica communications2019

Transcriptome signatures associated with meningioma progression.

Angela N Viaene, Bo Zhang, Maria Martinez-Lage, Chaomei Xiang, Umberto Tosi, Jayesh P Thawani, Busra Gungor, Yuankun Zhu, Laura Roccograndi, Logan Zhang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Acta neuropathologica communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  11. Advances in Central Nervous System Tumor Classification.Advances in experimental medicine and biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Angela N ViaeneDepartment of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Bo ZhangCenter for Data Driven Discovery in Biomedicine (D³b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Maria Martinez-LageDepartment of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Chaomei XiangDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Umberto TosiDepartment of Neurological Surgery, Weill Cornell Medicine, New York, NY, USA.
Jayesh P ThawaniDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Busra GungorDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Yuankun ZhuCenter for Data Driven Discovery in Biomedicine (D³b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Laura RoccograndiDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Logan ZhangDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Robert L BaileyDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Phillip B StormCenter for Data Driven Discovery in Biomedicine (D³b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Donald M O'RourkeDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Adam C ResnickCenter for Data Driven Discovery in Biomedicine (D³b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
M Sean GradyDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA. michael.grady@uphs.upenn.edu.
Nadia DahmaneDepartment of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA. nad2639@med.cornell.edu.
University of Pennsylvania · USChildren's Hospital of Philadelphia · USCornell University · USMassachusetts General Hospital · USNeurological Surgery · US

Funding

Transcriptional Control of Glioma DevelopmentR01NS093120 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI DAHMANE, NADIA · 2015 to 2018
$1.4M
NINDS NIH HHS R01 NS093120
6 · The paper itself

Abstract

Meningiomas are the most common primary brain tumor of adults. The majority are benign (WHO grade I), with a mostly indolent course; 20% of them (WHO grade II and III) are, however, considered aggressive and require a more complex management. WHO grade II and III tumors are heterogeneous and, in some cases, can develop from a prior lower grade meningioma, although most arise de novo. Mechanisms leading to progression or implicated in de novo grade II and III tumorigenesis are poorly understood. RNA-seq was used to profile the transcriptome of grade I, II, and III meningiomas and to identify genes that may be involved in progression. Bioinformatic analyses showed that grade I meningiomas that progress to a higher grade are molecularly different from those that do not. As such, we identify GREM2, a regulator of the BMP pathway, and the snoRNAs SNORA46 and SNORA48, as being significantly reduced in meningioma progression. Additionally, our study has identified several novel fusion transcripts that are differentially present in meningiomas, with grade I tumors that did not progress presenting more fusion transcripts than all other tumors. Interestingly, our study also points to a difference in the tumor immune microenvironment that correlates with histopathological grade.

Indexed as

Disease ProgressionTranscriptomeComputational BiologyFemaleHumansMaleMeningeal NeoplasmsMeningiomaNeoplasm GradingNeurofibromin 2RNA-SeqTumor MicroenvironmentNeurofibromin 2NF2 protein, humanImmune infiltrationMeningiomaProgressionsnoRNAsTranscriptome

Identifiers

PMID31039818
PMCPMC6489307
OpenAlexW2947019310

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.