Evidence map›Paper›PMID 31039781›Full record

ArticleMalaria journal2019

Ribosomal and non-ribosomal PCR targets for the detection of low-density and mixed malaria infections.

Lara Cotta Amaral, Daniela Rocha Robortella, Luiz Felipe Ferreira Guimarães, Jean Ezequiel Limongi, Cor Jesus Fernandes Fontes, Dhelio Batista Pereira, Cristiana Ferreira Alves de Brito, Flora Satiko Kano, Taís Nóbrega de Sousa, Luzia Helena Carvalho

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Lara Cotta AmaralInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil.
Daniela Rocha RobortellaInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil.
Luiz Felipe Ferreira GuimarãesInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil.
Jean Ezequiel LimongiUniversidade Federal de Uberlândia, Uberlândia, MG, Brazil.
Cor Jesus Fernandes FontesHospital Júlio Müller, Universidade Federal do Mato Grosso, Cuiabá, Mato Grosso, Brazil.
Dhelio Batista PereiraCentro de Pesquisas em Medicina Tropical de Rondônia (CEPEM), Porto Velho, Rondônia, Brazil.
Cristiana Ferreira Alves de BritoInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil.
Flora Satiko KanoInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil.
Taís Nóbrega de SousaInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil. tais@minas.fiocruz.br.
Luzia Helena CarvalhoInstituto René Rachou, Fundação Oswaldo Cruz, FIOCRUZ-MINAS, Belo Horizonte, MG, Brazil. lhcarvalho@minas.fiocruz.br.ORCID http://orcid.org/0000-0001-5822-4187
Fundação Oswaldo Cruz · BRUniversidade Federal de Minas Gerais · BRUniversidade Federal de Mato Grosso · BRUniversidade Federal de Uberlândia · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 310999/2017-0Conselho Nacional de Desenvolvimento Científico e Tecnológico 422257/2016-8Fundação de Amparo à Pesquisa do Estado de Minas Gerais APQ-02625-15
6 · The paper itself

Abstract

backgroundThe unexpected high proportion of submicroscopic malaria infections in areas with low transmission intensity challenges the control and elimination of malaria in the Americas. The current PCR-based assays present limitations as most protocols still rely on amplification of few-copies target gene. Here, the hypothesis was that amplification of different plasmodial targets-ribosomal (18S rRNA) and non-ribosomal multi-copy sequences (Pvr47 for Plasmodium vivax and Pfr364 for Plasmodium falciparum)-could increase the chances of detecting submicroscopic malaria infection.

methodsA non-ribosomal real-time PCR assay targeting Pvr47/Pfr364 (NR-qPCR) was established and compared with three additional PCR protocols, two of them based on 18S rRNA gene amplification (Nested-PCR and R-qPCR) and one based on Pvr47/Pfr364 targets (NR-cPCR). The limit of detection of each PCR protocol, at single and artificial mixed P. vivax/P. falciparum infections, was determined by end-point titration curves. Field samples from clinical (n = 110) and subclinical (n = 324) malaria infections were used to evaluate the impact of using multiple molecular targets to detect malaria infections.

resultsThe results demonstrated that an association of ribosomal and non-ribosomal targets did not increase sensitivity to detect submicroscopic malaria infections. Despite of that, artificial mixed-malaria infections demonstrated that the NR-qPCR was the most sensitive protocol to detect low-levels of P. vivax/P. falciparum co-infections. Field studies confirmed that submicroscopic malaria represented a large proportion (up to 77%) of infections among asymptomatic Amazonian residents, with a high proportion of infections (~ 20%) identified only by the NR-qPCR.

conclusionsThis study presents a new species-specific non-ribosomal PCR assay with potential to identify low-density P. vivax and P. falciparum infections. As the majority of subclinical infections was caused by P. vivax, the commonest form of malaria in the Amazon area, future studies should investigate the potential of Pvr47/Pfr364 to detect mixed-malaria infections in the field.

Indexed as

Real-Time Polymerase Chain ReactionAdultAsymptomatic InfectionsBrazilCoinfectionFemaleHumansLimit of DetectionMalariaMalaria, FalciparumMalaria, VivaxMaleMiddle AgedMolecular Diagnostic TechniquesPlasmodium falciparumPlasmodium vivaxRNA, Ribosomal, 18SMalariaMixed-malaria infectionsMolecular diagnosisPCRSubmicroscopic

Identifiers

PMID31039781
PMCPMC6492410
OpenAlexW2947943269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.