Evidence map›Paper›PMID 31039740›Full record

ArticleBMC plant biology2019

Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit.

S M Pilkington, J Tahir, E Hilario, S E Gardiner, D Chagné, A Catanach, J McCallum, L Jesson, L G Fraser, M A McNeilage and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  5. Molecular breeding of flower load related traits in dioecious autotetraploidMolecular breeding : new strategies in plant improvement · 2024
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  11. Targeted Mutagenesis of the Female-SuppressorPlants (Basel, Switzerland) · 2020
    Article
  12. QTL Mapping for Resistance to Cankers Induced byPathogens (Basel, Switzerland) · 2020
    Article
  13. Article
  14. Fine mapping of the sex locus inHorticulture research · 2020
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

S M PilkingtonThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
J TahirPFR, Private Bag 11600, Palmerston North, 4442, New Zealand.
E HilarioThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
S E GardinerPFR, Private Bag 11600, Palmerston North, 4442, New Zealand.
D ChagnéPFR, Private Bag 11600, Palmerston North, 4442, New Zealand.
A CatanachPFR, Private Bag 4704, Christchurch, 8140, New Zealand.
J McCallumPFR, Private Bag 4704, Christchurch, 8140, New Zealand.
L JessonPFR, Private Bag 1401, Havelock North, 4157, New Zealand.
L G FraserThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
M A McNeilageThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
C DengThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
R N CrowhurstThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
P M DatsonThe New Zealand Institute for Plant and Food Research Limited (PFR), Private Bag 92169, Auckland, 1142, New Zealand.
Q ZhangCAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China. qiongzhang@wbgcas.cn.ORCID http://orcid.org/0000-0002-2753-370X
Plant & Food Research · NZPalmerston North Hospital · NZChinese Academy of Sciences · CN

Funding

Agricultural and Marketing Research and Development Trust p16001National Natural Science Foundation of China (CN) 31772268
6 · The paper itself

Abstract

backgroundAngiosperm sex chromosomes, where present, are generally recently evolved. The key step in initiating the development of sex chromosomes from autosomes is the establishment of a sex-determining locus within a region of non-recombination. To better understand early sex chromosome evolution, it is important to determine the process by which recombination is suppressed around the sex determining genes. We have used the dioecious angiosperm kiwifruit Actinidia chinensis var. chinensis, which has an active-Y sex chromosome system, to study recombination rates around the sex locus, to better understand key events in the development of sex chromosomes.

resultsWe have confirmed the sex-determining region (SDR) in A. chinensis var. chinensis, using a combination of high density genetic mapping and fluorescent in situ hybridisation (FISH) of Bacterial Artificial Chromosomes (BACs) linked to the sex markers onto pachytene chromosomes. The SDR is a subtelomeric non-recombining region adjacent to the nucleolar organiser region (NOR). A region of restricted recombination of around 6 Mbp in size in both male and female maps spans the SDR and covers around a third of chromosome 25.

conclusionsAs recombination is suppressed over a similar region between X chromosomes and between and X and Y chromosomes, we propose that recombination is suppressed in this region because of the proximity of the NOR and the centromere, with both the NOR and centromere suppressing recombination, and this predates suppressed recombination due to differences between X and Y chromosomes. Such regions of suppressed recombination in the genome provide an opportunity for the evolution of sex chromosomes, if a sex-determining locus develops there or translocates into this region.

Indexed as

Chromosomes, PlantRecombination, GeneticSex ChromosomesActinidiaChromosome MappingChromosomes, Artificial, BacterialGenetic VariationIn Situ Hybridization, FluorescenceMicrosatellite RepeatsActinidiaEvolutionKiwifruitRecombination suppressionSex chromosomeSex determination

Identifiers

PMID31039740
PMCPMC6492441
OpenAlexW2947847832

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.