Evidence map›Paper›PMID 31039719›Full record

ArticleProceedings. Biological sciences2019

Neural arbors are Pareto optimal.

Arjun Chandrasekhar, Saket Navlakha

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. The exact mathematical form of the Pareto principle.Theory in biosciences = Theorie in den Biowissenschaften · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. A Statistical Growth Property of Plant Root Architectures.Plant phenomics (Washington, D.C.) · 2020
    Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Arjun Chandrasekhar1 Bioinformatics and Systems Biology Program , University of California , San Diego , UK.
Saket Navlakha1 Bioinformatics and Systems Biology Program , University of California , San Diego , UK.

Funding

CRCNS: Common algorithmic strategies used by the brain for labeling points in high-dimensional spaceR01DC017695 · NIDCD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI NAVLAKHA, SAKET · 2018 to 2020
$1.3M
NIDCD NIH HHS R01 DC017695
6 · The paper itself

Abstract

Neural arbors (dendrites and axons) can be viewed as graphs connecting the cell body of a neuron to various pre- and post-synaptic partners. Several constraints have been proposed on the topology of these graphs, such as minimizing the amount of wire needed to construct the arbor (wiring cost), and minimizing the graph distances between the cell body and synaptic partners (conduction delay). These two objectives compete with each other-optimizing one results in poorer performance on the other. Here, we describe how well neural arbors resolve this network design trade-off using the theory of Pareto optimality. We develop an algorithm to generate arbors that near-optimally balance between these two objectives, and demonstrate that this algorithm improves over previous algorithms. We then use this algorithm to study how close neural arbors are to being Pareto optimal. Analysing 14 145 arbors across numerous brain regions, species and cell types, we find that neural arbors are much closer to being Pareto optimal than would be expected by chance and other reasonable baselines. We also investigate how the location of the arbor on the Pareto front, and the distance from the arbor to the Pareto front, can be used to classify between some arbor types (e.g. axons versus dendrites, or different cell types), highlighting a new potential connection between arbor structure and function. Finally, using this framework, we find that another biological branching structure-plant shoot architectures used to collect and distribute nutrients-are also Pareto optimal, suggesting shared principles of network design between two systems separated by millions of years of evolution.

Indexed as

AlgorithmsAnimalsAxonsBrainComputational BiologyDendritesNerve Netbiological networksgraph theoryneural arborsPareto optimalityplant architectures

Identifiers

PMID31039719
PMCPMC6532510

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.