Evidence map›Paper›PMID 31039145›Full record

ArticlePloS one2019

Salt tolerance in indica rice cell cultures depends on a fine tuning of ROS signalling and homeostasis.

Bushra Ijaz, Elide Formentin, Beatrice Ronci, Vittoria Locato, Elisabetta Barizza, Muhammad Zeeshan Hyder, Fiorella Lo Schiavo, Tayyaba Yasmin

Registry-linked trialAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04728139 (Assessment of Glypican 3 as a Predictive Marker in Colorectal Cancer Patients), which is not on this map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04728139 naunknown statusnot on this mapstarted 2022, after this paper: background citation

Assessment of Glypican 3 as a Predictive Marker in Colorectal Cancer Patients

TypeinterventionalSponsorAssiut UniversityRan2022 to 2024Enrolled90ConditionsColorectal CancerArmsglypican 3
3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Exploring Natural Variations inPlants (Basel, Switzerland) · 2024
    Article
  4. Article
  5. Genome-Wide Identification of theInternational journal of molecular sciences · 2023
    Article
  6. Article
  7. Proteomic Approaches to Uncover Salt Stress Response Mechanisms in Crops.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Phospholipids in Salt Stress Response.Plants (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bushra IjazDepartment of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan.
Elide FormentinDepartment of Biology, University of Padova, Padova, Italy.
Beatrice RonciDepartment of Scienze biochimiche e della nutrizione, University Campus Bio-Medico Rome, Italy.
Vittoria LocatoDepartment of Scienze biochimiche e della nutrizione, University Campus Bio-Medico Rome, Italy.ORCID 0000-0003-0267-5039
Elisabetta BarizzaDepartment of Biology, University of Padova, Padova, Italy.
Muhammad Zeeshan HyderDepartment of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan.
Fiorella Lo SchiavoDepartment of Biology, University of Padova, Padova, Italy.
Tayyaba YasminDepartment of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Among cereal crops, salinity tolerance is rare and complex. Multiple genes control numerous pathways, which constitute plant's response to salinity. Cell cultures act as model system and are useful to investigate the salinity response which can possibly mimic a plant's response to stress. In the present study two indica rice varieties, KS-282 and Super Basmati which exhibited contrasting sodium chloride (NaCl) stress response were used to establish cell cultures. The cell cultures showed a contrasting response to salt stress at 100 mM NaCl. High level of intracellular hydrogen peroxide (H2O2) and nitric oxide (NO) were observed in sensitive cell culture for prolonged period as compared to the tolerant cells in which an extracellular H2O2 burst along with controlled intracellular H2O2 and NO signal was seen. To evaluate the role of NO in inducing cell death under salt stress, cell death percentage (CDP) was measured after 2-4-carboxyphenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (cPTIO) pre-treatment. CDP was reduced significantly in both tolerant and sensitive cell cultures emphasizing NO's possible role in programmed cell death. Expression analysis of apoplastic NADPH oxidase, i.e. OsRbohA and recently characterised OSCA family members i.e. OsOSCA 1.2 and OsOSCA 3.1 was done. Intracellular H2O2/NO levels displayed an interplay between Ca2+ influx and ROS/RNS signal. Detoxifying enzyme (i.e. ascorbate peroxidase and catalase) activity was considerably higher in tolerant KS-282 while the activity of superoxide dismutase was significantly prominent in the sensitive cells triggering greater oxidative damage owing to the prolonged presence of intracellular H2O2. Salt stress and ROS responsive TFs i.e. OsSERF1 and OsDREB2A were expressed exclusively in the tolerant cells. Similarly, the expression of genes involved in maintaining high [K+]/[Na+] ratio was considerably higher and earlier in the tolerant variety. Overall, we suggest that a control over ROS production, and an increase in the expression of genes important for potassium homeostasis play a dynamic role in salinity tolerance in rice cell cultures.

Indexed as

Salt ToleranceAscorbate PeroxidasesCatalaseCell Culture TechniquesCells, CulturedHomeostasisOryzaOxidative StressPlant ProteinsPotassiumReactive Oxygen SpeciesSeedsSodium ChlorideSuperoxide DismutaseAscorbate PeroxidasesCatalasePlant ProteinsPotassiumReactive Oxygen SpeciesSodium ChlorideSuperoxide Dismutase

Identifiers

PMID31039145
PMCPMC6490951

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.