Evidence map›Paper›PMID 31038472›Full record

ArticleThe Journal of clinical investigation2019

Aberrant splicing contributes to severe α-spectrin-linked congenital hemolytic anemia.

Patrick G Gallagher, Yelena Maksimova, Kimberly Lezon-Geyda, Peter E Newburger, Desiree Medeiros, Robin D Hanson, Jennifer Rothman, Sara Israels, Donna A Wall, Robert F Sidonio and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Review
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  5. Review
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  7. Article
  8. Article
  9. Article
  10. Combinatorial Power of cfDNA, CTCs and EVs in Oncology.Diagnostics (Basel, Switzerland) · 2022
    Review
  11. Diagnosis and clinical management of red cell membrane disorders.Hematology. American Society of Hematology. Education Program · 2021
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Anemia lurking in introns.The Journal of clinical investigation · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 13 institutions in 3 countries.

Patrick G GallagherDepartment of Pediatrics.
Yelena MaksimovaDepartment of Pediatrics.
Kimberly Lezon-GeydaDepartment of Pediatrics.
Peter E NewburgerDepartment of Pediatrics, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Desiree MedeirosKapiolani Medical Center for Women & Children, Honolulu, Hawaii, USA.
Robin D HansonCardinal's Kids Cancer Center, St. Louis, Missouri, USA.
Jennifer RothmanDepartment of Pediatrics, Duke University Medical Center, Durham, North Carolina, USA.
Sara IsraelsDepartment of Pediatrics and Child Health, University of Manitoba, Winnipeg, Manitoba, Canada.
Donna A WallHospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.
Robert F SidonioDepartment of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, USA.
Colin SieffHarvard Medical School, Dana-Farber and Boston Children's, Cancer and Blood Disorders Center, Boston, Massachusetts, USA.
L Kate GowansBeaumont Children's Hospital, Royal Oak, Michigan, USA.
Nupur MittalDepartment of Pediatrics, Rush University Medical Center, Chicago, Illinois, USA.
Roland Rivera-SantiagoThe Center for Systems and Computational Biology and Molecular and Cellular Oncogenesis Program, The Wistar Institute, Philadelphia, Pennsylvania, USA.
David W SpeicherThe Center for Systems and Computational Biology and Molecular and Cellular Oncogenesis Program, The Wistar Institute, Philadelphia, Pennsylvania, USA.
Susan J BasergaDepartment of Genetics, and.
Vincent P SchulzDepartment of Pediatrics.
Pediatrics and Genetics · USThe Wistar Institute · USYale University · USCardinal Health (Australia) · AUCorewell Health Children's · USDana-Farber/Boston Children's Cancer and Blood Disorders Center · USDuke Medical Center · USEmory University · USKapiolani Medical Center for Women and Children · USRush University Medical Center · USUniversity of Manitoba · CAUniversity of Massachusetts Chan Medical School · USUniversity of Toronto · CA

Funding

YEAST MEMBRANE CYTOSKELETONP01DK032094 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI NARLA, MOHANDAS · 1987 to 2021
$26.7M
TRAINING PROGRAM IN BASIC CANCER RESEARCHT32CA009171 · NCI · WISTAR INSTITUTE · PI Alessandro Gardini · 1985 to 2026
$15.3M
Yale Cooperative Hematology Specialized Core CenterU54DK106857 · NIDDK · YALE UNIVERSITY · PI JOHN HWA, Diane S Krause · 2015 to 2026
$9.7M
MOLECULAR BIOLOGY OF HUMAN ERYTHROCYTE ALPHA-SPECTRINR01HL065448 · NHLBI · YALE UNIVERSITY · PI GALLAGHER, PATRICK G · 2000 to 2013
$4.4M
Advancing Cancer Research through Comprehensive Proteomics and Metabolomics AnalysesR50CA221838 · NCI · WISTAR INSTITUTE · PI Hsin-Yao Tang · 2017 to 2026
$2.1M
Key factors in human ribosome biogenesisR01GM115710 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 2015 to 2018
$1.6M
A New Role for the PAX9 Protein in Ribosome BiogenesisR01GM122926 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 2017 to 2019
$663k
NCI NIH HHS R50 CA221838NCI NIH HHS T32 CA009171NHLBI NIH HHS R01 HL065448NIDDK NIH HHS P01 DK032094NIDDK NIH HHS U54 DK106857NIGMS NIH HHS R01 GM115710NIGMS NIH HHS R01 GM122926
6 · The paper itself

Abstract

The etiology of severe hemolytic anemia in most patients with recessive hereditary spherocytosis (rHS) and the related disorder hereditary pyropoikilocytosis (HPP) is unknown. Whole exome sequencing of DNA from probands of 24 rHS or HPP kindreds identified numerous mutations in erythrocyte membrane α-spectrin (SPTA1). Twenty-eight mutations were novel, with null alleles frequently found in trans to missense mutations. No mutations were identified in a third of SPTA1 alleles (17/48). Whole genome sequencing revealed linkage disequilibrium between the common rHS-linked α-spectrinBug Hill polymorphism and a rare intron 30 variant in all 17 mutation-negative alleles. In vitro minigene studies and in vivo splicing analyses revealed the intron 30 variant changes a weak alternate branch point (BP) to a strong BP. This change leads to increased utilization of an alternate 3' splice acceptor site, perturbing normal α-spectrin mRNA splicing and creating an elongated mRNA transcript. In vivo mRNA stability studies revealed the newly created termination codon in the elongated transcript activates nonsense mediated decay leading to spectrin deficiency. These results demonstrate a unique mechanism of human genetic disease contributes to the etiology of a third of cases of rHS, facilitating diagnosis and treatment of severe anemia, and identifying a new target for therapeutic manipulation.

Indexed as

Anemia, Hemolytic, CongenitalErythrocyte MembraneMutation, MissenseRNA Splice SitesSpectrinFemaleHumansMaleRNA SplicingRNA Splice SitesSpectrinGenetic diseasesGeneticsHematology

Identifiers

PMID31038472
PMCPMC6597203
OpenAlexW2943449347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.