Evidence map›Paper›PMID 31037450›Full record

ArticleJournal of gastroenterology2019

Integrated analysis of circRNAs and mRNAs expression profile revealed the involvement of hsa_circ_0007919 in the pathogenesis of ulcerative colitis.

Tingting Wang, Ning Chen, Weixia Ren, Fangfang Liu, Fangfang Gao, Lei Ye, Ying Han, Yujun Zhang, Yulan Liu

Abstract read
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In one paragraph

Article in Journal of gastroenterology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Circular RNAs in inflammatory bowel disease.Frontiers in immunology · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Multiomics Integrative Analysis IdentifyingBioMed research international · 2022
    Article
  12. Article
  13. Article
  14. Circular RNA CREBBP Suppresses Hepatic FibrosisFrontiers in pharmacology · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tingting WangInstitute of Clinical Molecular Biology and Central Laboratory, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Ning ChenDepartment of Gatroenterology, Peking University People's Hospital, No. 11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Weixia RenInstitute of Clinical Molecular Biology and Central Laboratory, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Fangfang LiuDepartment of Pathology, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Fangfang GaoInstitute of Clinical Molecular Biology and Central Laboratory, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Lei YeInstitute of Clinical Molecular Biology and Central Laboratory, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Ying HanInstitute of Clinical Molecular Biology and Central Laboratory, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China.
Yujun ZhangInstitute of Clinical Molecular Biology and Central Laboratory, Peking University People's Hospital, No.11 Xizhimen South Street, Beijing, 100044, People's Republic of China. zhangyujun@pkuph.edu.cn.
Yulan LiuDepartment of Gatroenterology, Peking University People's Hospital, No. 11 Xizhimen South Street, Beijing, 100044, People's Republic of China. liuyulan@pkuph.edu.cn.
Peking University · CNPeking University People's Hospital · CN

Funding

Peking University People's Hospital Research and Development Funds RDX2018-05
6 · The paper itself

Abstract

backgroundUlcerative colitis (UC) is characterized by chronic inflammation in the colon and epigenetic factors underlying the occurrence. Circular RNAs (circRNAs) have been under intensive focus due to the circular construct and gene-regulating functions. However, the changes and roles of circRNAs in UC remain unknown.

methodsMicroarrays were used to detect the differentially expressed genes, and quantitative real-time PCR was used to identify the changes in UC. In silico analyses were performed to predict the functions of circRNAs and mRNAs. In vitro, epithelial cell lines were stimulated by pro-inflammation effectors to test the alterations in circRNAs. CircRNAs-microRNAs-mRNAs network clarified the potential mechanisms underlying circRNAs in UC. The binding site between hsa_circ_0007919 and miR-138 or let-7a was verified using dual-luciferase assay.

resultsA total of 264 significantly dysregulated circRNAs and 1869 differentially expressed mRNAs in inflamed mucosa were compared with the non-inflamed mucosa in UC. Hsa_circ_0004662 and hsa_circ_0007919 were altered largely in UC tissues. Hsa_circ_0007919 was reduced persistently after inflammatory treatments, and it was relevant to Mayo endoscopic subscores and the expression of tight junction molecules. Finally, hsa_circ_0007919 could harbor miR-138, and let-7a to regulate the targeted mRNAs EPC1 and VIPR1.

conclusionsSeveral circRNAs were differentially expressed in UC. Hsa_circ_0007919 is related to clinical characteristics and epithelial integrity by binding to hsa-let-7a, hsa-miR-138 to regulate the target genes. CircRNAs, especially hsa_circ_0007919, are associated with the pathogenesis and development of UC, with potential diagnostic and therapeutic implications.

Indexed as

AdultCaco-2 CellsColitis, UlcerativeComputer SimulationFemaleHumansMaleMicroRNAsMiddle AgedOligonucleotide Array Sequence AnalysisRNA, CircularRNA, MessengerYoung AdultMicroRNAsMIRN138 microRNA, humanmirnlet7 microRNA, humanRNA, CircularRNA, MessengerCircular RNAsEpithelial barrierhsa_circ_0007919miRNA spongesUlcerative colitis

Identifiers

PMID31037450
OpenAlexW2943620167

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.