Evidence map›Paper›PMID 31036922›Full record

ArticleNature chemical biology2019

Biosynthesis of a conserved glycolipid anchor for Gram-negative bacterial capsules.

Liam Doyle, Olga G Ovchinnikova, Katharine Myler, Evan Mallette, Bo-Shun Huang, Todd L Lowary, Matthew S Kimber, Chris Whitfield

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Liam Doyle *Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0001-8080-0283
Olga G Ovchinnikova *Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0002-0937-475X
Katharine MylerDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Evan MalletteDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Bo-Shun HuangAlberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0003-2394-0292
Todd L LowaryAlberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0002-8331-8211
Matthew S KimberDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. mkimber@uoguelph.ca.ORCID http://orcid.org/0000-0001-9454-5586
Chris WhitfieldDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. cwhitfie@uoguelph.ca.ORCID http://orcid.org/0000-0002-5267-7027
University of Guelph · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several important Gram-negative bacterial pathogens possess surface capsular layers composed of hypervariable long-chain polysaccharides linked via a conserved 3-deoxy-β-D-manno-oct-2-ulosonic acid (β-Kdo) oligosaccharide to a phosphatidylglycerol residue. The pathway for synthesis of the terminal glycolipid was elucidated by determining the structures of reaction intermediates. In Escherichia coli, KpsS transfers a single Kdo residue to phosphatidylglycerol; this primer is extended using a single enzyme (KpsC), possessing two cytidine 5'-monophosphate (CMP)-Kdo-dependent glycosyltransferase catalytic centers with different linkage specificities. The structure of the N-terminal β-(2→4) Kdo transferase from KpsC reveals two α/β domains, supplemented by several helices. The N-terminal Rossmann-like domain, typically responsible for acceptor binding, is severely reduced in size compared with canonical GT-B folds in glycosyltransferases. The similar structure of the C-terminal β-(2→7) Kdo transferase indicates a past gene duplication event. Both Kdo transferases have a narrow active site tunnel, lined with key residues shared with GT99 β-Kdo transferases. This enzyme provides the prototype for the GT107 family.

Indexed as

Bacterial CapsulesGlycolipidsGram-Negative BacteriaModels, MolecularMolecular StructureTransferasesGlycolipidsTransferases

Identifiers

PMID31036922
OpenAlexW2943171367

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.