Evidence map›Paper›PMID 31036808›Full record

ArticleNature communications2019

LncRNA EPR controls epithelial proliferation by coordinating Cdkn1a transcription and mRNA decay response to TGF-β.

Martina Rossi, Gabriele Bucci, Dario Rizzotto, Domenico Bordo, Matteo J Marzi, Margherita Puppo, Arielle Flinois, Domenica Spadaro, Sandra Citi, Laura Emionite and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 115 citations in OpenAlex.

  1. Gm26550 Modulates Learning and Memory by Increasing IGF1 mRNA Expression and Stability in Nrf2Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  4. Novel role of the lncRNA EPR as oncosuppressor in intestinal cancer.bioRxiv : the preprint server for biology · 2026
    Article
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  14. A hidden translatome in tumors-the coding lncRNAs.Science China. Life sciences · 2023
    Review
  15. Article
  16. Mechanisms of Long Non-Coding RNA in Breast Cancer.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Martina RossiGene Expression Regulation Laboratory, IRCCS Ospedale Policlinico San Martino, 16132, Genova, Italy.
Gabriele BucciCenter of Translational Genomics and Bioinformatics, IRCCS Ospedale San Raffaele, 20132, Milano, Italy.ORCID http://orcid.org/0000-0001-9838-7204
Dario RizzottoLaboratory of Transcriptional Networks, Center for Integrative Biology, CIBIO, University of Trento, 38123, Trento, Italy.
Domenico BordoGene Expression Regulation Laboratory, IRCCS Ospedale Policlinico San Martino, 16132, Genova, Italy.
Matteo J MarziCenter for Genomic Science of IIT@SEMM, Istituto Italiano di Tecnologia (IIT), 20139, Milano, Italy.
Margherita PuppoGene Expression Regulation Laboratory, IRCCS Ospedale Policlinico San Martino, 16132, Genova, Italy.
Arielle FlinoisDepartment of Cell Biology, University of Geneve, 1211, Geneve, Switzerland.
Domenica SpadaroDepartment of Cell Biology, University of Geneve, 1211, Geneve, Switzerland.
Sandra CitiDepartment of Cell Biology, University of Geneve, 1211, Geneve, Switzerland.ORCID http://orcid.org/0000-0002-6537-4818
Laura EmioniteAnimal Facility, IRCCS Policlinico San Martino, 16132, Genova, Italy.
Michele CilliAnimal Facility, IRCCS Policlinico San Martino, 16132, Genova, Italy.
Francesco NicassioCenter for Genomic Science of IIT@SEMM, Istituto Italiano di Tecnologia (IIT), 20139, Milano, Italy.ORCID http://orcid.org/0000-0002-5954-5318
Alberto IngaLaboratory of Transcriptional Networks, Center for Integrative Biology, CIBIO, University of Trento, 38123, Trento, Italy. alberto.inga@unitn.it.
Paola BriataGene Expression Regulation Laboratory, IRCCS Ospedale Policlinico San Martino, 16132, Genova, Italy. paola.briata@hsanmartino.it.
Roberto GherziGene Expression Regulation Laboratory, IRCCS Ospedale Policlinico San Martino, 16132, Genova, Italy. rgherzi@ucsd.edu.ORCID http://orcid.org/0000-0001-8654-0611
Ospedale Policlinico San Martino · ITUniversity of Geneva · CHIstituto Nazionale di Fisica Nucleare, Sezione di Genova · ITItalian Institute of Technology · ITUniversity of Trento · ITIRCCS Ospedale San Raffaele · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) are emerging as regulators of fundamental biological processes. Here we report on the characterization of an intergenic lncRNA expressed in epithelial tissues which we termed EPR (Epithelial cell Program Regulator). EPR is rapidly downregulated by TGF-β and its sustained expression largely reshapes the transcriptome, favors the acquisition of epithelial traits, and reduces cell proliferation in cultured mammary gland cells as well as in an animal model of orthotopic transplantation. EPR generates a small peptide that localizes at epithelial cell junctions but the RNA molecule per se accounts for the vast majority of EPR-induced gene expression changes. Mechanistically, EPR interacts with chromatin and regulates Cdkn1a gene expression by affecting both its transcription and mRNA decay through its association with SMAD3 and the mRNA decay-promoting factor KHSRP, respectively. We propose that EPR enables epithelial cells to control proliferation by modulating waves of gene expression in response to TGF-β.

Indexed as

AnimalsCell ProliferationCells, CulturedCyclin-Dependent Kinase Inhibitor p21HumansRNA, Long NoncodingRNA StabilitySmad3 ProteinTranscriptomeTransforming Growth Factor betaCyclin-Dependent Kinase Inhibitor p21RNA, Long NoncodingSmad3 ProteinTransforming Growth Factor beta

Identifiers

PMID31036808
PMCPMC6488594
OpenAlexW2943148913

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.