Evidence map›Paper›PMID 31036069›Full record

ArticleGenome biology2019

CRISPR directed evolution of the spliceosome for resistance to splicing inhibitors.

Haroon Butt, Ayman Eid, Afaque A Momin, Jeremie Bazin, Martin Crespi, Stefan T Arold, Magdy M Mahfouz

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 141 citations in OpenAlex.

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  12. Expression and Functional Analysis of the Compact ThermophilicInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Haroon ButtLaboratory for Genome Engineering and Synthetic Biology, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Ayman EidLaboratory for Genome Engineering and Synthetic Biology, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Afaque A MominDivision of Biological and Environmental Sciences and Engineering, Computational Bioscience Research Center, KAUST, Thuwal, Saudi Arabia.
Jeremie BazinCNRS, INRA, Institute of Plant Sciences Paris-Saclay IPS2, Univ Paris Sud, Univ Evry, Univ Paris-Diderot, Sorbonne Paris-Cite, Universite Paris-Saclay, Orsay, France.
Martin CrespiCNRS, INRA, Institute of Plant Sciences Paris-Saclay IPS2, Univ Paris Sud, Univ Evry, Univ Paris-Diderot, Sorbonne Paris-Cite, Universite Paris-Saclay, Orsay, France.
Stefan T AroldDivision of Biological and Environmental Sciences and Engineering, Computational Bioscience Research Center, KAUST, Thuwal, Saudi Arabia.
Magdy M MahfouzLaboratory for Genome Engineering and Synthetic Biology, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia. Magdy.mahfouz@kaust.edu.sa.
King Abdullah University of Science and Technology · SASorbonne Paris Cité · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Increasing genetic diversity via directed evolution holds great promise to accelerate trait development and crop improvement. We developed a CRISPR/Cas-based directed evolution platform in plants to evolve the rice (Oryza sativa) SF3B1 spliceosomal protein for resistance to splicing inhibitors. SF3B1 mutant variants, termed SF3B1-GEX1A-Resistant (SGR), confer variable levels of resistance to splicing inhibitors. Studies of the structural basis of the splicing inhibitor binding to SGRs corroborate the resistance phenotype. This directed evolution platform can be used to interrogate and evolve the molecular functions of key biomolecules and to engineer crop traits for improved performance and adaptation under climate change conditions.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsEvolution, MolecularGenetic TechniquesSpliceosomesFatty AlcoholsOryzaPlant ProteinsProtein DomainsPyransFatty AlcoholsherboxidienePlant ProteinsPyransCRISPR/Cas9Directed evolutionGenome engineeringHerbicide resistanceHerboxidienePladienolide BSF3B1SF3B complexSpliceosomeSpliceostatin ASplicing modulators

Identifiers

PMID31036069
PMCPMC6489355
OpenAlexW2944038963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.