Evidence map›Paper›PMID 31035948›Full record

ArticleBMC microbiology2019

Plasmids of Shigella flexneri serotype 1c strain Y394 provide advantages to bacteria in the host.

Pawan Parajuli, Munazza I Rajput, Naresh K Verma

Abstract read
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Antibiotic-ResistantMicroorganisms · 2023
    Article
  2. Article
  3. Article
  4. Article
  5. Infection and drug resistance · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Pawan ParajuliDivision of Biomedical Science and Biochemistry, Research School of Biology, The Australian National University, Canberra, ACT, Australia.
Munazza I RajputDivision of Biomedical Science and Biochemistry, Research School of Biology, The Australian National University, Canberra, ACT, Australia.
Naresh K VermaDivision of Biomedical Science and Biochemistry, Research School of Biology, The Australian National University, Canberra, ACT, Australia. naresh.verma@anu.edu.au.ORCID 0000-0001-8109-2215

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundShigella flexneri has an extremely complex genome with a significant number of virulence traits acquired by mobile genetic elements including bacteriophages and plasmids. S. flexneri serotype 1c is an emerging etiological agent of bacillary dysentery in developing countries. In this study, the complete nucleotide sequence of two plasmids of S. flexneri serotype 1c strain Y394 was determined and analysed.

resultsThe plasmid pINV-Y394 is an invasive or virulence plasmid of size 221,293 bp composed of a large number of insertion sequences (IS), virulence genes, regulatory and maintenance genes. Three hundred and twenty-eight open reading frames (ORFs) were identified in pINV-Y394, of which about a half (159 ORFs) were identified as IS elements. Ninety-seven ORFs were related to characterized genes (majority of which are associated with virulence and their regulons), and 72 ORFs were uncharacterized or hypothetical genes. The second plasmid pNV-Y394 is of size 10,866 bp and encodes genes conferring resistance against multiple antibiotics of clinical importance. The multidrug resistance gene cassette consists of tetracycline resistance gene tetA, streptomycin resistance gene strA-strB and sulfonamide-resistant dihydropteroate synthase gene sul2.

conclusionsThese two plasmids together play a key role in the fitness of Y394 in the host environment. The findings from this study indicate that the pathogenic S. flexneri is a highly niche adaptive pathogen which is able to co-evolve with its host and respond to the selection pressure in its environment.

Indexed as

Base SequenceDNA, BacterialDNA Transposable ElementsDrug Resistance, Multiple, BacterialOpen Reading FramesPhylogenyPlasmidsSerogroupShigella flexneriVirulenceDNA, BacterialDNA Transposable ElementsBacterial pathogenMultidrug resistancePlasmidsShigella flexneriVirulence

Identifiers

PMID31035948
PMCPMC6489325

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.