Evidence map›Paper›PMID 31035191›Full record

ArticleWater research2019

Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor.

Xinwei Mao, Benoit Stenuit, Julien Tremblay, Ke Yu, Susannah G Tringe, Lisa Alvarez-Cohen

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Water research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Xinwei MaoDepartment of Civil and Environmental Engineering, University of California, Berkeley, CA, 94720-1710, USA.
Benoit StenuitDepartment of Civil and Environmental Engineering, University of California, Berkeley, CA, 94720-1710, USA.
Julien TremblayDOE Joint Genome Institute, Walnut Creek, CA, USA.
Ke YuDepartment of Civil and Environmental Engineering, University of California, Berkeley, CA, 94720-1710, USA.
Susannah G TringeDOE Joint Genome Institute, Walnut Creek, CA, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Lisa Alvarez-CohenDepartment of Civil and Environmental Engineering, University of California, Berkeley, CA, 94720-1710, USA; Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. Electronic address: alvarez@ce.berkeley.edu.
University of California, Berkeley · USLawrence Berkeley National Laboratory · USJoint Genome Institute · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORELLO-FROSCH, RACHEL ADELE · 1987 to 2025
$74.6M
Metabolic Interactions Supporting Effective TCE Bioremediation under Various BiogR01ES024255 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ALVAREZ-COHEN, LISA · 2014 to 2017
$762k
Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668NIEHS NIH HHS P42 ES004705NIEHS NIH HHS R01 ES024255
6 · The paper itself

Abstract

A trichloroethene (TCE)-dechlorinating community (CANAS) maintained in a completely mixed flow reactor was established from a semi-batch enrichment culture (ANAS) and was monitored for 400 days at a low solids retention time (SRT) under electron acceptor limitation. Around 85% of TCE supplied to CANAS (0.13 mmol d

Indexed as

ChloroflexiTrichloroethyleneVinyl ChlorideBiodegradation, EnvironmentalTranscriptomeTrichloroethyleneVinyl ChlorideCMFRCommunity structureCompletely mixed flow reactorsDechlorinationDehalococcoidesFunctional robustnessPCEPerchloroetheneSequence read archiveSludge retention timeSRASRTTCETMMTranscriptomic analysisTrichloroetheneTrimmed mean of M-values

Identifiers

PMID31035191
PMCPMC7053656
OpenAlexW2939909519

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.