Evidence map›Paper›PMID 31033461›Full record

ArticleCancer biomarkers : section A of Disease markers2019

Secretome analysis of oral keratinocytes chronically exposed to shisha.

Shankargouda Patil, Niraj Babu, Tejaswini Subbannayya, Sonali V Mohan, Gajanan Sathe, Hitendra S Solanki, Pavithra Rajagopalan, Krishna Patel, Jayshree Advani, Shilpa Bhandi and 4 more

Abstract read
In one paragraph

Article in Cancer biomarkers : section A of Disease markers, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

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2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 5 countries.

Shankargouda PatilDepartment of Medical Biotechnologies, School of Dental Medicine, University of Siena, Siena, Italy.
Niraj BabuInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Tejaswini SubbannayyaInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Sonali V MohanInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Gajanan SatheInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Hitendra S SolankiInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Pavithra RajagopalanInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Krishna PatelInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Jayshree AdvaniInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Shilpa BhandiDepartment of Restorative Dental Sciences, Division of Operative Dentistry, College of Dentistry, Jazan University, Jazan, Saudi Arabia.
David SidranskyDepartment of Otolaryngology - Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Aditi ChatterjeeInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Harsha GowdaInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Marco FerrariDepartment of Medical Biotechnologies, School of Dental Medicine, University of Siena, Siena, Italy.
Institute of Bioinformatics · INManipal Academy of Higher Education · INUniversity of Siena · ITJazan University · SAJohns Hopkins Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundShisha smoking has been associated with multiple diseases including oral cancer. However, a mechanistic study to investigate alteration of secreted proteins in oral cells due to shisha smoking is lacking.

objectivesElucidation of differentially secreted proteins by immortalized human normal oral keratinocytes (OKF6/TERT1) upon chronic exposure to shisha.

methodsOKF6/TERT1 was chronically treated with 0.5% shisha extract for 8 months. Conditioned media from shisha treated (OKF6/TERT1-Shisha) and untreated (OKF6/TERT1-Parental) cells were subjected to TMT-based quantitative proteomic analysis. Bioinformatics analysis of differentially secreted proteins was carried out using SignalP, SecretomeP and TMHMM. Immunoblot validation of selected proteins was carried out to confirm the proteomics results.

resultsProteomic analysis of OKF6/TERT1-Parental and OKF6/TERT1-Shisha secretome resulted in the identification of 1,598 proteins, of which 218 proteins were found to be differentially secreted (⩾ 1.5-fold; p-value ⩽ 0.05) in shisha treated cells. Bioinformatics analysis using prediction tools showed secretory potential of differentially secreted proteins identified in OKF6/TERT1-Shisha. Western blotting validated the expression of AKR1C2, HSPH1 and MMP9 in OKF6/TERT1-Shisha secretome in agreement with proteomic data.

conclusionThis study serves as a useful resource to understand the effect of chronic shisha smoking on the milieu of secreted proteins of oral cells. In vivo studies are warranted to supplement our in vitro data to elucidate the role of these proteins as early diagnostic biomarkers for oral carcinogenesis among shisha smokers.

Indexed as

Biomarkers, TumorCell LineComputational BiologyHumansKeratinocytesMouth NeoplasmsPlant ExtractsProteomeProteomicsTobacco, WaterpipeBiomarkers, TumorPlant ExtractsProteomeOKF6/TERT1oral cancerproteomicssecretory biomarkersTMTwaterpipe

Identifiers

PMID31033461
PMCPMC13082416
OpenAlexW2941007954

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.