Evidence map›Paper›PMID 31031000›Full record

ArticleCell2019

Neuronal Dynamics Regulating Brain and Behavioral State Transitions.

Aaron S Andalman, Vanessa M Burns, Matthew Lovett-Barron, Michael Broxton, Ben Poole, Samuel J Yang, Logan Grosenick, Talia N Lerner, Ritchie Chen, Tyler Benster and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed, 2 pooled it
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 2 syntheses or guidelines pooled it, 274 citations in OpenAlex.

  1. Pooled it
  2. Response Flexibility: The Role of the Lateral Habenula.Frontiers in behavioral neuroscience · 2022
    Pooled it
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  17. Chromatix: a differentiable, GPU-accelerated wave-optics library.bioRxiv : the preprint server for biology · 2026
    Article
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88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Aaron S AndalmanDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA; CNC Program, Stanford University, Stanford, CA 94305, USA.
Vanessa M BurnsDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA 94305, USA.
Matthew Lovett-BarronDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA; CNC Program, Stanford University, Stanford, CA 94305, USA.
Michael BroxtonDepartment of Computer Science, Stanford University, Stanford, CA 94305, USA.
Ben PooleDepartment of Computer Science, Stanford University, Stanford, CA 94305, USA.
Samuel J YangDepartment of Electrical Engineering, Stanford University, Stanford, CA 94305, USA.
Logan GrosenickDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA; Neurosciences Program, Stanford University, Stanford, CA 94305, USA.
Talia N LernerDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA.
Ritchie ChenDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA.
Tyler BensterNeurosciences Program, Stanford University, Stanford, CA 94305, USA.
Philippe MourrainStanford Center for Sleep Sciences and Medicine, Stanford University, Stanford, CA 94305, USA; Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA 94305, USA; INSERM U1024, Ecole Normale Supérieure Paris, Paris 75005, France.
Marc LevoyDepartment of Computer Science, Stanford University, Stanford, CA 94305, USA.
Kanaka RajanDepartment of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Karl DeisserothDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA; CNC Program, Stanford University, Stanford, CA 94305, USA; Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA. Electronic address: deissero@stanford.edu.
Stanford University · USAllen Institute for Brain Science · USHoward Hughes Medical Institute · USInserm · FR

Funding

Impact of sleep-wake circuits on cortical synapse plasticity during motor learningR01NS104950 · NINDS · STANFORD UNIVERSITY · PI MOURRAIN, PHILIPPE · 2018 to 2022
$2.6M
Sleep promotion in zebrafish by hypocretin neuronal networksR01NS062798 · NINDS · STANFORD UNIVERSITY · PI MOURRAIN, PHILIPPE · 2008 to 2012
$2.5M
Melanin-Concentrating Hormone: Ancestral Role in Feeding & Sleep RegulationR01DK090065 · NIDDK · STANFORD UNIVERSITY · PI MOURRAIN, PHILIPPE · 2011 to 2015
$1.8M
Melanin-Concentrating Hormone: Ancestral Role in Feeding & Sleep RegulationR56DK090065 · NIDDK · STANFORD UNIVERSITY · PI MOURRAIN, PHILIPPE · 2010 to 2010
$271k
Discovery and characterization of brain-wide neuromodulatory circuits regulating arousalK99MH112840 · NIMH · STANFORD UNIVERSITY · PI LOVETT-BARRON, MATTHEW · 2017 to 2018
$242k
Contributions of Parallel Nigrostriatal Dopamine Circuits to Reward Learning and Habit FormationK99MH109569 · NIMH · STANFORD UNIVERSITY · PI LERNER, TALIA NEWCOMBE · 2016 to 2017
$120k
Howard Hughes Medical InstituteNIMH NIH HHS K99 MH109569NIMH NIH HHS K99 MH112840
6 · The paper itself

Abstract

Prolonged behavioral challenges can cause animals to switch from active to passive coping strategies to manage effort-expenditure during stress; such normally adaptive behavioral state transitions can become maladaptive in psychiatric disorders such as depression. The underlying neuronal dynamics and brainwide interactions important for passive coping have remained unclear. Here, we develop a paradigm to study these behavioral state transitions at cellular-resolution across the entire vertebrate brain. Using brainwide imaging in zebrafish, we observed that the transition to passive coping is manifested by progressive activation of neurons in the ventral (lateral) habenula. Activation of these ventral-habenula neurons suppressed downstream neurons in the serotonergic raphe nucleus and caused behavioral passivity, whereas inhibition of these neurons prevented passivity. Data-driven recurrent neural network modeling pointed to altered intra-habenula interactions as a contributory mechanism. These results demonstrate ongoing encoding of experience features in the habenula, which guides recruitment of downstream networks and imposes a passive coping behavioral strategy.

Indexed as

Adaptation, PsychologicalAnimalsBehavior, AnimalBrainHabenulaLarvaNeural PathwaysNeuronsRaphe NucleiSerotonergic NeuronsSerotoninStress, PhysiologicalZebrafishZebrafish ProteinsSerotoninZebrafish Proteins

Identifiers

PMID31031000
PMCPMC6726130
OpenAlexW2941652504

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.