Evidence map›Paper›PMID 31029704›Full record

ArticleJournal of molecular biology2019

The Role of Pyrophosphorolysis in the Initiation-to-Elongation Transition by E. coli RNA Polymerase.

Masahiko Imashimizu, Maria L Kireeva, Lucyna Lubkowska, Mikhail Kashlev, Nobuo Shimamoto

Abstract read
In one paragraph

Article in Journal of molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Masahiko ImashimizuMolecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Koto-ku, Tokyo 135-0064, Japan. Electronic address: m.imashimizu@aist.go.jp.
Maria L KireevaRNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Lucyna LubkowskaRNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Mikhail KashlevRNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Nobuo ShimamotoNational Institute of Genetics, Mishima, Shizuoka 411-8540, Japan. Electronic address: nshima@nig.ac.jp.

Funding

Mechanism of transcription-coupled DNA repair and transcription mutagenesisZIABC011202 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KASHLEV, MIKHAIL · 2009 to 2020
$4.5M
Mechanisms of transcription fidelity in prokaryotes and eukaryotesZ01BC010795 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KASHLEV, MIKHAIL · 2007 to 2008
$1.1M
Intramural NIH HHS Z01 BC010795Intramural NIH HHS ZIA BC011202
6 · The paper itself

Abstract

RNA polymerase can cleave a phosphodiester bond at the 3' end of a nascent RNA in the presence of pyrophosphate producing NTP. Pyrophosphorolysis has been characterized during elongation steps of transcription where its rate is significantly slower than the forward rate of NMP addition. In contrast, we report here that pyrophosphorolysis can occur in a millisecond time scale during the transition of Escherichia coli RNA polymerase from initiation to elongation at the psbA2 promoter. This rapid pyrophosphorolysis occurs during productive RNA synthesis as opposed to abortive RNA synthesis. Dissociation of σ

Indexed as

Transcription, GeneticDiphosphatesDNA-Directed RNA PolymerasesEscherichia coliPhosphorylationPromoter Regions, GeneticRNA, BacterialSigma FactorDiphosphatesDNA-Directed RNA PolymerasesRNA, BacterialSigma Factorbranched initiation pathwayproductive complexpyrophosphateRNA polymerasesigma subunit

Identifiers

PMID31029704
PMCPMC8190572

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.