Evidence map›Paper›PMID 31028613›Full record

ArticlePlant molecular biology2019

Xyloglucan exoglycosidases in the monocot model Brachypodium distachyon and the conservation of xyloglucan disassembly in angiosperms.

Diego Rubianes, Elene R Valdivia, Gloria Revilla, Ignacio Zarra, Javier Sampedro

Abstract read
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In one paragraph

Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Diego RubianesDpto. Biología Funcional, Facultad de Biología, Universidade de Santiago, 15782, Santiago de Compostela, Spain.
Elene R ValdiviaDpto. Biología Funcional, Facultad de Biología, Universidade de Santiago, 15782, Santiago de Compostela, Spain.ORCID http://orcid.org/0000-0001-6773-0583
Gloria RevillaDpto. Biología Funcional, Facultad de Biología, Universidade de Santiago, 15782, Santiago de Compostela, Spain.ORCID http://orcid.org/0000-0002-2150-8538
Ignacio ZarraDpto. Biología Funcional, Facultad de Biología, Universidade de Santiago, 15782, Santiago de Compostela, Spain.ORCID http://orcid.org/0000-0001-7203-0688
Javier SampedroDpto. Biología Funcional, Facultad de Biología, Universidade de Santiago, 15782, Santiago de Compostela, Spain. javier.sampedro@usc.es.ORCID http://orcid.org/0000-0002-6534-5347
Universidade de Santiago de Compostela · ES

Funding

Ministerio de Economía, Industria y Competitividad, Gobierno de España BIO2012-40032-C03-01Xunta de Galicia ED431B 2016/021Xunta de Galicia GPC2013-044
6 · The paper itself

Abstract

key messageBrachypodium distachyon has a full set of exoglycosidases active on xyloglucan, including α-xylosidase, β-galactosidase, soluble and membrane-bound β-glucosidases and two α-fucosidases. However, unlike in Arabidopsis, both fucosidases are likely cytosolic. Xyloglucan is present in primary walls of all angiosperms. While in most groups it regulates cell wall extension, in Poaceae its role is still unclear. Five exoglycosidases participate in xyloglucan hydrolysis in Arabidopsis: α-xylosidase, β-galactosidase, α-fucosidase, soluble β-glucosidase and GPI-anchored β-glucosidase. Mutants in the corresponding genes show alterations in xyloglucan composition. In this work putative orthologs in the model grass Brachypodium distachyon were tested for their ability to complement Arabidopsis mutants. Xylosidase and galactosidase mutants were complemented, respectively, by BdXYL1 (Bd2g02070) and BdBGAL1 (Bd2g56607). BdBGAL1, unlike other xyloglucan β-galactosidases, is able to remove both galactoses from XLLG oligosaccharides. In addition, soluble β-glucosidase BdBGLC1 (Bd1g08550) complemented a glucosidase mutant. Closely related BdBGLC2 (Bd2g51280), which has a putative GPI-anchor sequence, was found associated with the plasma membrane and only a truncated version without GPI-anchor complemented the mutant, proving that Brachypodium also has soluble and membrane-bound xyloglucan glucosidases. Both BdXFUC1 (Bd3g25226) and BdXFUC2 (Bd1g28366) can hydrolyze fucose from xyloglucan oligosaccharides but were unable to complement a fucosidase mutant. Fluorescent protein fusions of BdXFUC1 localized to the cytosol and both proteins lack a signal peptide. Signal peptides appear to have evolved only in some eudicot lineages of this family, like the one leading to Arabidopsis. These results could be explained if cytosolic xyloglucan α-fucosidases are the ancestral state in angiosperms, with fucosylated oligosaccharides transported across the plasma membrane.

Indexed as

BrachypodiumConserved SequenceGlucansGlycoside HydrolasesPlant ProteinsXylansGlucansGlycoside HydrolasesPlant ProteinsXylansxyloglucanArabidopsisBrachypodium distachyonCell wallExoglycosidasesNicotiana benthamianaXyloglucan

Identifiers

PMID31028613
OpenAlexW2941283309

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.