Evidence map›Paper›PMID 31028379›Full record

ArticleGenome biology and evolution2019

Complete Genome Sequences of Xanthomonas axonopodis pv. glycines Isolates from the United States and Thailand Reveal Conserved Transcription Activator-Like Effectors.

Sara C D Carpenter, Lawan Kladsuwan, Sang-Wook Han, Sutruedee Prathuangwong, Adam J Bogdanove

Abstract read
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In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sara C D CarpenterPlant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University.
Lawan KladsuwanDepartment of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand.
Sang-Wook HanDepartment of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea.
Sutruedee PrathuangwongDepartment of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand.
Adam J BogdanovePlant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To compare overall genome structure and transcription activator-like effector content, we completely sequenced Xanthomonas axonopodis pv. glycines strain 12-2, isolated in 1992 in Thailand, and strain EB08, isolated in 2008 in the United States (Iowa) using PacBio technology. We reassembled the genome sequence for a second US strain, 8ra, derived from a 1980 Iowa isolate, from existing PacBio reads. Despite geographic and temporal separation, the three genomes are highly syntenous, and their transcription activator-like effector repertoires are highly conserved.

Indexed as

Base SequenceConserved SequenceThailandTranscription Activator-Like EffectorsUnited StatesWhole Genome SequencingXanthomonas axonopodisTranscription Activator-Like Effectorsbacterial pustule of soybeanPacBio sequencingplant pathogenic bacteriaTAL effectorsXanthomonas axonopodis pv. glycinesXanthomonas citri pv. glycines

Identifiers

PMID31028379
PMCPMC6505444

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.