Evidence map›Paper›PMID 31028251›Full record

ArticleNature communications2019

Cryo-EM structures of the pore-forming A subunit from the Yersinia entomophaga ABC toxin.

Sarah J Piper, Lou Brillault, Rosalba Rothnagel, Tristan I Croll, Joseph K Box, Irene Chassagnon, Sebastian Scherer, Kenneth N Goldie, Sandra A Jones, Femke Schepers and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Science advances · 2025
    Article
  3. Evaluating TcAs for Use in Biotechnology Applications.Biotech (Basel (Switzerland)) · 2025
    Article
  4. Article
  5. Review
  6. Biantennary N-glycans As Receptors for MARTX Toxins inbioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Challenges and approaches to studying pore-forming proteins.Biochemical Society transactions · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Sarah J PiperSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia Queensland, 4072, Australia.ORCID http://orcid.org/0000-0001-5337-5197
Lou BrillaultSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia Queensland, 4072, Australia.
Rosalba RothnagelInstitute for Molecular Bioscience, The University of Queensland, St Lucia Queensland, 4072, Australia.
Tristan I CrollCambridge Institute of Medical Research, University of Cambridge, Cambridge Cambridgeshire, CB2 0XY, United Kingdom.
Joseph K BoxSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia Queensland, 4072, Australia.
Irene ChassagnonSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia Queensland, 4072, Australia.
Sebastian SchererCentre for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, 4058, Basel, Switzerland.
Kenneth N GoldieCentre for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, 4058, Basel, Switzerland.
Sandra A JonesForage Science Group, AgResearch, Christchurch, 8140, New Zealand.
Femke SchepersFaculty of Science, Leiden University, 2300 RA, Leiden, The Netherlands.
Lauren Hartley-TassellInstitute for Glycomics, Griffith University, Gold Coast Queensland, 4222, Australia.
Thomas VeInstitute for Glycomics, Griffith University, Gold Coast Queensland, 4222, Australia.ORCID http://orcid.org/0000-0002-0113-1905
Jason N BusbySchool of Biological Sciences, University of Auckland, Auckland, 1142, New Zealand.
Julie E DalzielFood & Bio-based Products Group, AgResearch, Palmerston North, 4442, New Zealand.ORCID http://orcid.org/0000-0003-3629-2351
J Shaun LottSchool of Biological Sciences, University of Auckland, Auckland, 1142, New Zealand.ORCID http://orcid.org/0000-0003-3660-452X
Ben HankamerInstitute for Molecular Bioscience, The University of Queensland, St Lucia Queensland, 4072, Australia.
Henning StahlbergCentre for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0002-1185-4592
Mark R H HurstForage Science Group, AgResearch, Christchurch, 8140, New Zealand.
Michael J LandsbergSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia Queensland, 4072, Australia. m.landsberg@uq.edu.au.ORCID http://orcid.org/0000-0002-2464-990X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ABC toxins are pore-forming virulence factors produced by pathogenic bacteria. YenTcA is the pore-forming and membrane binding A subunit of the ABC toxin YenTc, produced by the insect pathogen Yersinia entomophaga. Here we present cryo-EM structures of YenTcA, purified from the native source. The soluble pre-pore structure, determined at an average resolution of 4.4 Å, reveals a pentameric assembly that in contrast to other characterised ABC toxins is formed by two TcA-like proteins (YenA1 and YenA2) and decorated by two endochitinases (Chi1 and Chi2). We also identify conformational changes that accompany membrane pore formation by visualising YenTcA inserted into liposomes. A clear outward rotation of the Chi1 subunits allows for access of the protruding translocation pore to the membrane. Our results highlight structural and functional diversity within the ABC toxin subfamily, explaining how different ABC toxins are capable of recognising diverse hosts.

Indexed as

Bacterial ProteinsCryoelectron MicroscopyLiposomesToxins, BiologicalYersiniaBacterial ProteinsLiposomesToxins, Biological

Identifiers

PMID31028251
PMCPMC6486591

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.