Evidence map›Paper›PMID 31028249›Full record

ArticleNature communications2019

Dynamic gene regulation by nuclear colony-stimulating factor 1 receptor in human monocytes and macrophages.

Laura Bencheikh, M'Boyba Khadija Diop, Julie Rivière, Aygun Imanci, Gerard Pierron, Sylvie Souquere, Audrey Naimo, Margot Morabito, Michaël Dussiot, Frédéric De Leeuw and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. The EGR1/ZFP36 axis governs glycosphingolipid metabolic reprogramming in monocyte-derived macrophages in guillain-barré syndrome.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2026
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  17. Characterization of a p53/miR-34a/CSF1R/STAT3 Feedback Loop in Colorectal Cancer.Cellular and molecular gastroenterology and hepatology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Laura BencheikhINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France.
M'Boyba Khadija DiopINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France.ORCID http://orcid.org/0000-0002-7849-4405
Julie RivièreINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Aygun ImanciINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Gerard PierronCNRS UMR9196, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Sylvie SouquereCNRS UMR9196, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Audrey NaimoINSERM US23, CNRS UMS 3655, AMMICa, Genomic platform, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Margot MorabitoINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Michaël DussiotINSERM U1163, CNRS UMR8254, Institut Imagine, Hôpital Necker Enfants Malades, 75015, Paris, France.
Frédéric De LeeuwINSERM US23, CNRS UMS 3655, AMMICa, Imaging and Cytometry Platform, Gustave Roussy Cancer Center, 94805, Villejuif, France.
Camille LobryINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France.ORCID http://orcid.org/0000-0003-0550-4921
Eric SolaryINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France. eric.solary@gustaveroussy.fr.
Nathalie DroinINSERM U1170, Gustave Roussy Cancer Center, 94805, Villejuif, France. nathalie.droin@gustaveroussy.fr.ORCID http://orcid.org/0000-0002-6099-5324
Université Paris-Sud · FRCentre National de la Recherche Scientifique · FRInserm · FRHôpital Necker-Enfants Malades · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite their location at the cell surface, several receptor tyrosine kinases (RTK) are also found in the nucleus, as either intracellular domains or full length proteins. However, their potential nuclear functions remain poorly understood. Here we find that a fraction of full length Colony Stimulating Factor-1 Receptor (CSF-1R), an RTK involved in monocyte/macrophage generation, migrates to the nucleus upon CSF-1 stimulation in human primary monocytes. Chromatin-immunoprecipitation identifies the preferential recruitment of CSF-1R to intergenic regions, where it co-localizes with H3K4me1 and interacts with the transcription factor EGR1. When monocytes are differentiated into macrophages with CSF-1, CSF-1R is redirected to transcription starting sites, colocalizes with H3K4me3, and interacts with ELK and YY1 transcription factors. CSF-1R expression and chromatin recruitment is modulated by small molecule CSF-1R inhibitors and altered in monocytes from chronic myelomonocytic leukemia patients. Unraveling this dynamic non-canonical CSF-1R function suggests new avenues to explore the poorly understood functions of this receptor and its ligands.

Indexed as

Gene Expression RegulationCell MembraneChromatinCRISPR-Cas SystemsEarly Growth Response Protein 1ets-Domain Protein Elk-1Fluorescent DyesGene EditingHEK293 CellsHistonesHumansLeukemia, Myelomonocytic, ChronicMacrophage Colony-Stimulating FactorMacrophagesMaleimidesPrimary Cell CultureAlexa Fluor 488 C5-maleimideChromatinCSF1 protein, humanCSF1R protein, humanEarly Growth Response Protein 1EGR1 protein, humanets-Domain Protein Elk-1Fluorescent DyesHistonesMacrophage Colony-Stimulating FactorMaleimidesReceptor, Macrophage Colony-Stimulating FactorReceptors, Granulocyte-Macrophage Colony-Stimulating FactorRNA, Small InterferingYY1 Transcription Factor

Identifiers

PMID31028249
PMCPMC6486619
OpenAlexW2941373057

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.