Evidence map›Paper›PMID 31028138›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Oncogenic mutations at the EGFR ectodomain structurally converge to remove a steric hindrance on a kinase-coupled cryptic epitope.

Laura Orellana, Amy H Thorne, Rafael Lema, Johan Gustavsson, Alison D Parisian, Adam Hospital, Tiago N Cordeiro, Pau Bernadó, Andrew M Scott, Isabelle Brun-Heath and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 57 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Accurate identification and mechanistic evaluation of pathogenic missense variants withProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Structural insights into the role and targeting of EGFRvIII.Structure (London, England : 1993) · 2024
    Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Locally secreted BiTEs complement CAR T cells by enhancing killing of antigen heterogeneous solid tumors.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  19. International journal of molecular sciences · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 6 countries.

Laura OrellanaScience for Life Laboratory, KTH Royal Institute of Technology, 17165 Solna, Sweden; laura.orellana@scilifelab.se wcavenee@ucsd.edu ffurnari@ucsd.edu modesto.orozco@irbbarcelona.org.ORCID 0000-0003-1927-555X
Amy H ThorneLudwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA 92093-0660.
Rafael LemaInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, 08028 Barcelona, Catalonia, Spain.
Johan GustavssonDepartment of Computational Science and Technology, KTH Royal Institute of Technology, 11428 Stockholm, Sweden.
Alison D ParisianLudwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA 92093-0660.
Adam HospitalInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, 08028 Barcelona, Catalonia, Spain.
Tiago N CordeiroInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, 2780-157 Oeiras, Portugal.ORCID 0000-0003-2663-3220
Pau BernadóCentre de Biochimie Structurale (CBS), INSERM, CNRS, Université de Montpellier, 34090 Montpellier, France.
Andrew M ScottOlivia Newton-John Cancer Research Institute, Austin Hospital, Heidelberg, VIC 3084, Australia.
Isabelle Brun-HeathInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, 08028 Barcelona, Catalonia, Spain.
Erik LindahlScience for Life Laboratory, KTH Royal Institute of Technology, 17165 Solna, Sweden.
Webster K CaveneeLudwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA 92093-0660; laura.orellana@scilifelab.se wcavenee@ucsd.edu ffurnari@ucsd.edu modesto.orozco@irbbarcelona.org.ORCID 0000-0003-3804-9179
Frank B FurnariLudwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA 92093-0660; laura.orellana@scilifelab.se wcavenee@ucsd.edu ffurnari@ucsd.edu modesto.orozco@irbbarcelona.org.ORCID 0000-0003-1909-4361
Modesto OrozcoInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, 08028 Barcelona, Catalonia, Spain; laura.orellana@scilifelab.se wcavenee@ucsd.edu ffurnari@ucsd.edu modesto.orozco@irbbarcelona.org.
University of California San Diego · USStockholm University · SECentre National de la Recherche Scientifique · FRInstitute for Research in Biomedicine · ESKTH Royal Institute of Technology · SELa Trobe University · AU

Funding

Contemporary Approaches to Cancer Cell Signaling and CommunicationT32CA009523 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DONOGHUE, DANIEL J, YANG, JING · 1985 to 2025
$12.1M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Genotypic Interactions in Brain Cancer HeterogeneityR01NS080939 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FURNARI, FRANK · 2012 to 2022
$3.5M
Regulation of Receptor Tyrosine KinasesR01GM065490 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI DONOGHUE, DANIEL J · 2002 to 2005
$1.0M
European Research Council 291433NCI NIH HHS T32 CA009523NIGMS NIH HHS R01 GM065490NIGMS NIH HHS T32 GM008666NINDS NIH HHS R01 NS080939
6 · The paper itself

Abstract

Epidermal growth factor receptor (EGFR) signaling is initiated by a large ligand-favored conformational change of the extracellular domain (ECD) from a closed, self-inhibited tethered monomer, to an open untethered state, which exposes a loop required for strong dimerization and activation. In glioblastomas (GBMs), structurally heterogeneous missense and deletion mutations concentrate at the ECD for unclear reasons. We explore the conformational impact of GBM missense mutations, combining elastic network models (ENMs) with multiple molecular dynamics (MD) trajectories. Our simulations reveal that the main missense class, located at the I-II interface away from the self-inhibitory tether, can unexpectedly favor spontaneous untethering to a compact intermediate state, here validated by small-angle X-ray scattering (SAXS). Significantly, such intermediate is characterized by the rotation of a large ECD fragment (N-TR1), deleted in the most common GBM mutation, EGFRvIII, and that makes accessible a cryptic epitope characteristic of cancer cells. This observation suggested potential structural equivalence of missense and deletion ECD changes in GBMs. Corroborating this hypothesis, our FACS, in vitro, and in vivo data demonstrate that entirely different ECD variants all converge to remove N-TR1 steric hindrance from the 806-epitope, which we show is allosterically coupled to an intermediate kinase and hallmarks increased oncogenicity. Finally, the detected extraintracellular coupling allows for synergistic cotargeting of the intermediate with mAb806 and inhibitors, which is proved herein.

Indexed as

Genes, erbB-1EpitopesGlioblastomaHEK293 CellsHumansMutation, MissenseEpitopescancercryptoepitopeintermediatemutational heterogeneitystructural convergence

Identifiers

PMID31028138
PMCPMC6525488
OpenAlexW2942360795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.