Evidence map›Paper›PMID 31028100›Full record

ArticleScience immunology2019

TET enzymes augment activation-induced deaminase (AID) expression via 5-hydroxymethylcytosine modifications at the

Chan-Wang J Lio, Vipul Shukla, Daniela Samaniego-Castruita, Edahi González-Avalos, Abhijit Chakraborty, Xiaojing Yue, David G Schatz, Ferhat Ay, Anjana Rao

Abstract read
In one paragraph

Article in Science immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 92 citations in OpenAlex.

  1. Review
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  11. The LIM-domain-only protein LMO2 and its binding partner LDB1 are differentially required for class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Review
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  14. B-Cell Epigenetic Modulation of IgA Response by 5-Azacytidine and IgA Nephropathy.Journal of the American Society of Nephrology : JASN · 2024
    Article
  15. Article
  16. SUMO-specific protease 1 regulates germinal center B cell response through deSUMOylation of PAX5.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chan-Wang J LioDivision of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA. arao@lji.org lio@lji.org.ORCID 0000-0003-3876-6741
Vipul ShuklaDivision of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA.ORCID 0000-0003-1422-5182
Daniela Samaniego-CastruitaDivision of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA.ORCID 0000-0001-6082-6603
Edahi González-AvalosDivision of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA.
Abhijit ChakrabortyDivision of Vaccine Discovery, La Jolla Institute, San Diego, CA, USA.
Xiaojing YueDivision of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA.
David G SchatzDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0002-5669-1176
Ferhat AyDivision of Vaccine Discovery, La Jolla Institute, San Diego, CA, USA.ORCID 0000-0002-0708-6914
Anjana RaoDivision of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA. arao@lji.org lio@lji.org.
La Jolla Institute for Immunology · USYale University · US

Funding

The TET-DNMT-ASXL1-OGT axis: relevance to clonal hematopoiesis, heterochromatin integrity and cancerR35CA210043 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Anjana Rao · 2016 to 2026
$10.6M
NFAT, bZIP proteins, and transcriptional programs in lymphocytesR01AI109842 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Patrick Hogan, Anjana Rao · 2014 to 2026
$8.6M
Investigating the role of TET deficiency in promoting T cell expansion and inflammationR01AI128589 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2017 to 2025
$5.3M
Targeting of somatic hypermutation in the genomeR01AI127642 · NIAID · YALE UNIVERSITY · PI SCHATZ, DAVID G. · 2017 to 2025
$4.6M
Studying the function of human genetic variation in the light of 3D genome organizationR35GM128938 · NIGMS · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Ferhat Ay · 2018 to 2026
$4.6M
Mechanisms regulating lncRNA short and long range signalingR01MH111267 · NIMH · NORTHWESTERN UNIVERSITY AT CHICAGO · PI KOHTZ, JHUMKU DUTT · 2017 to 2022
$3.3M
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NCI NIH HHS R35 CA210043NCRR NIH HHS S10 RR027366NIAID NIH HHS R01 AI109842NIAID NIH HHS R01 AI127642NIAID NIH HHS R01 AI128589NIGMS NIH HHS R35 GM128938NIH HHS S10 OD016262NIMH NIH HHS R01 MH111267
6 · The paper itself

Abstract

TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine to 5-hydroxymethylcytosine (5hmC). Here, we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. Functionally, Tet2 and Tet3 regulate class switch recombination (CSR) in murine B cells by enhancing expression of

Indexed as

5-MethylcytosineAICDA (Activation-Induced Cytidine Deaminase)AnimalsBasic-Leucine Zipper Transcription FactorsB-LymphocytesCell DifferentiationCells, CulturedCytidine DeaminaseDioxygenasesDNA-Binding ProteinsDNA DemethylationGene Expression RegulationGenetic LociImmunoglobulin Class SwitchingLymphocyte ActivationMice5-hydroxymethylcytosine5-MethylcytosineAICDA (Activation-Induced Cytidine Deaminase)Basic-Leucine Zipper Transcription FactorsBatf protein, mouseCytidine DeaminaseDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTet2 protein, mouseTet3 protein, mouse

Identifiers

PMID31028100
PMCPMC6599614
OpenAlexW2941331525

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.