Evidence map›Paper›PMID 31028022›Full record

ArticleApplied and environmental microbiology2019

Red Sea SAR11 and

Luke R Thompson, Mohamed F Haroon, Ahmed A Shibl, Matt J Cahill, David K Ngugi, Gareth J Williams, James T Morton, Rob Knight, Kelly D Goodwin, Ulrich Stingl

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Luke R ThompsonRed Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia lukethompson@gmail.com ulistingl@gmail.com.ORCID 0000-0002-3911-1280
Mohamed F HaroonRed Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Ahmed A ShiblRed Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.ORCID 0000-0002-8147-8406
Matt J CahillRed Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
David K NgugiRed Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.ORCID 0000-0002-0442-4279
Gareth J WilliamsSchool of Ocean Sciences, Bangor University, Anglesey, United Kingdom.
James T MortonDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.
Rob KnightDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.
Kelly D GoodwinOcean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, stationed at Southwest Fisheries Science Center, La Jolla, California, USA.ORCID 0000-0001-9583-8073
Ulrich StinglRed Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia lukethompson@gmail.com ulistingl@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Evidence suggests many marine bacteria are cosmopolitan, with widespread but sparse strains poised to seed abundant populations under conducive growth conditions. However, studies supporting this "microbial seed bank" hypothesis have analyzed taxonomic marker genes rather than whole genomes/metagenomes, leaving open the possibility that disparate ocean regions harbor endemic gene content. The Red Sea is isolated geographically from the rest of the ocean and has a combination of high irradiance, high temperature, and high salinity that is unique among the oceans; we therefore asked whether it harbors endemic gene content. We sequenced and assembled single-cell genomes of 21 SAR11 (subclades Ia, Ib, Id, and II) and 5

Indexed as

Genome, BacterialMetagenomeAlphaproteobacteriaIndian OceanPhylogenyProchlorococcusSeawatermetagenomicsmetatranscriptomicsPelagibacterpopulation genomicssingle-cell genomics

Identifiers

PMID31028022
PMCPMC6581160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.