Evidence map›Paper›PMID 31025552›Full record

ArticleCancer medicine2019

DNA alteration-based classification of uveal melanoma gives better prognostic stratification than immune infiltration, which has a neutral effect in high-risk group.

Deepti Narasimhaiah, Catherine Legrand, Diane Damotte, Romain Remark, Marco Munda, Patrick De Potter, Pierre G Coulie, Miikka Vikkula, Catherine Godfraind

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Deepti NarasimhaiahHuman Molecular Genetics, de Duve Institute, Université catholique de Louvain, Brussels, Belgium.ORCID 0000-0001-7870-9018
Catherine LegrandInstitute of Statistics, Biostatistics and Actuarial Sciences, Université catholique de Louvain, Louvain-la-Neuve, Belgium.
Diane DamotteTeam "Cancer, Immune control, and Escape", Centre de Recherche des Cordeliers, INSERM U1138, Paris, France.
Romain RemarkTeam "Cancer, Immune control, and Escape", Centre de Recherche des Cordeliers, INSERM U1138, Paris, France.
Marco MundaInstitute of Statistics, Biostatistics and Actuarial Sciences, Université catholique de Louvain, Louvain-la-Neuve, Belgium.
Patrick De PotterDepartment of Ophthalmology, Université catholique de Louvain, Brussels, Belgium.
Pierre G Couliede Duve Institute, Université catholique de Louvain, Brussels, Belgium.
Miikka VikkulaHuman Molecular Genetics, de Duve Institute, Université catholique de Louvain, Brussels, Belgium.
Catherine GodfraindHuman Molecular Genetics, de Duve Institute, Université catholique de Louvain, Brussels, Belgium.ORCID 0000-0001-7336-2588
de Duve Institute · BEUCLouvain · BEInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn uveal melanomas, immune infiltration is a marker of poor prognosis. This work intended to decipher the biological characteristics of intra-tumor immune population, compare it to other established biomarkers and to patients' outcome.

methodsPrimary, untreated, and mainly large uveal melanomas with retinal detachment were analyzed using: transcriptomic profiling (n = 15), RT-qPCR (n = 36), immunohistochemistry (n = 89), Multiplex Ligation-dependent Probe Amplification (MLPA) for copy number alterations (CNA) analysis (n = 89), array-CGH (n = 17), and survival statistics (n = 86).

resultsGene expression analysis divided uveal melanomas into two groups, according to the IFNγ/STAT1-IRF1 pathway activation. Tumors with IFNγ-signature had poorer prognosis and showed increased infiltration of CD8

conclusionsHigh degree of immune cell infiltration occurs in a subset of uveal melanomas, is interferon-gamma-related, and associated with poor survival. It allows for two-tier stratification, which is prognostically less efficient than a three-tier one. The best prognostic stratification is by CNA model with three risk-groups where immune cell infiltration impacts only some subgroups.

Indexed as

Disease-Free SurvivalFemaleGene ExpressionHumansMaleMelanomaPrognosisUveal MelanomaUveal Neoplasms

Identifiers

PMID31025552
PMCPMC6558590
OpenAlexW2940637261

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.