Evidence map›Paper›PMID 31025197›Full record

ArticlePlanta2019

Expression patterns of alpha-amylase and beta-amylase genes provide insights into the molecular mechanisms underlying the responses of tea plants (Camellia sinensis) to stress and postharvest processing treatments.

Chuan Yue, Hongli Cao, Hongzheng Lin, Juan Hu, Yijun Ye, Jiamin Li, Zhilong Hao, Xinyuan Hao, Yun Sun, Yajun Yang and 1 more

Abstract read
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In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 116 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Chuan YueCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China. yccyyx@163.com.ORCID http://orcid.org/0000-0003-4867-914X
Hongli CaoCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Hongzheng LinCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Juan HuCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Yijun YeCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Jiamin LiCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Zhilong HaoCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Xinyuan HaoTea Research Institute, Chinese Academy of Agricultural Sciences/National Center for Tea Improvement/Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, China.
Yun SunCollege of Horticulture, Fujian Agriculture and Forestry University/Key Laboratory of Tea Science, Universities of Fujian Province, Fuzhou, China.
Yajun YangTea Research Institute, Chinese Academy of Agricultural Sciences/National Center for Tea Improvement/Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, China. yjyang@tricaas.com.
Xinchao WangTea Research Institute, Chinese Academy of Agricultural Sciences/National Center for Tea Improvement/Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, China. wangxinchao@caas.cn.
Fujian Agriculture and Forestry University · CNChinese Academy of Agricultural Sciences · CN

Funding

Chinese Oolong Tea Industry Innovation Center (Cultivation) special project J2015-75Construction of Plateau Discipline of Fujian Province 102/71201801101Earmarked Fund for China Agriculture Research System CARS-19National Natural Science Foundation of China 31600555National Natural Science Foundation of China 31800587Natural Science Foundation of Fujian Province 2017J01616State Key Laboratory of Soil Plant Machinery System Technology 2016C02053-4
6 · The paper itself

Abstract

MAIN

conclusionThe alpha-amylase and beta-amylase genes have been identified from tea plants, and their bioinformatic characteristics and expression patterns provide a foundation for further studies to elucidate their biological functions. Alpha-amylase (AMY)- and beta-amylase (BAM)-mediated starch degradation plays central roles in carbohydrate metabolism and participates extensively in the regulation of a wide range of biological processes, including growth, development and stress response. However, the AMY and BAM genes in tea plants (Camellia sinensis) are poorly understood, and the biological functions of these genes remain to be elucidated. In this study, three CsAMY and nine CsBAM genes from tea plants were identified based on genomic and transcriptomic database analyses, and the genes were subjected to comprehensive bioinformatic characterization. Phylogenetic analysis showed that the CsAMY proteins could be clustered into three different subfamilies, and nine CsBAM proteins could be classified into four groups. Putative catalytically active proteins were identified based on multiple sequence alignments, and the tertiary structures of these proteins were analyzed. Cis-element analysis indicated that CsAMY and CsBAM were extensively involved in tea plant growth, development and stress response. In addition, the CsAMY and CsBAM genes were differentially expressed in various tissues and were regulated by stress treatments (e.g., ABA, cold, drought and salt stress), and the expression patterns of these genes were associated with the postharvest withering and rotation processes. Taken together, our results will enhance the understanding of the roles of the CsAMY and CsBAM gene families in the growth, development and stress response of tea plants and of the potential functions of these genes in determining tea quality during the postharvest processing of tea leaves.

Indexed as

Gene Expression Regulation, Plantalpha-Amylasesbeta-AmylaseCamellia sinensisDroughtsGene Expression ProfilingPlant ProteinsSequence AlignmentStress, Physiologicalalpha-Amylasesbeta-AmylasePlant ProteinsAlpha-amylase genes (AMY)Beta-amylase genes (BAM)Postharvest processingStress responseTea plant

Identifiers

PMID31025197
OpenAlexW2941995330

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.