Evidence map›Paper›PMID 31025190›Full record

ArticleJournal of molecular modeling2019

Molecular modeling of the effects of glycosylation on the structure and dynamics of human interferon-gamma.

Elena Lilkova, Peicho Petkov, Nevena Ilieva, Elena Krachmarova, Genoveva Nacheva, Leandar Litov

Abstract read
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In one paragraph

Article in Journal of molecular modeling, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Heparan Sulfate Facilitates Binding of hIFNInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. Molecular Mechanism of the Anti-Inflammatory Action of Heparin.International journal of molecular sciences · 2021
    Article
  9. Observational
  10. Frontiers in immunology · 2021
    Article
  11. Post-Translational Modifications of Circulating Alpha-1-Antitrypsin Protein.International journal of molecular sciences · 2020
    Review
  12. The role of interferon-γ in cardiovascular disease: an update.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2020
    Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Elena LilkovaInstitute of Information and Communication Technologies at the Bulgarian Academy of Sciences, Acad. G. Bonchev Str., Block 25A, 1113, Sofia, Bulgaria. elilkova@parallel.bas.bg.ORCID http://orcid.org/0000-0003-2008-710X
Peicho PetkovFaculty of Physics, Atomic Physics Department, Sofia University "St. Kliment Ohridski", 5 J. Bouchier Blvd, 1164, Sofia, Bulgaria.
Nevena IlievaInstitute of Information and Communication Technologies at the Bulgarian Academy of Sciences, Acad. G. Bonchev Str., Block 25A, 1113, Sofia, Bulgaria.
Elena KrachmarovaInstitute of Molecular Biology "Roumen Tsanev" at the Bulgarian Academy of Sciences, Acad. G. Bonchev Str, Block 21, 1113, Sofia, Bulgaria.
Genoveva NachevaInstitute of Molecular Biology "Roumen Tsanev" at the Bulgarian Academy of Sciences, Acad. G. Bonchev Str, Block 21, 1113, Sofia, Bulgaria.
Leandar LitovFaculty of Physics, Atomic Physics Department, Sofia University "St. Kliment Ohridski", 5 J. Bouchier Blvd, 1164, Sofia, Bulgaria.
Bulgarian Academy of Sciences · BGSofia University "St. Kliment Ohridski" · BG

Funding

Bulgarian National Science Fund DN-11/20/2017Bulgarian National Science Fund DNTS-Austia-01-2/2013Programme for Young Scientists' Career Development at the Bulgarian Academy of Sciences DFNP-17-146/2017
6 · The paper itself

Abstract

Natural hIFNγ is a glycoprotein with two N-glycosylation sites in each monomer chain, which are independently and differentially glycosylated. Although glycosylation is not necessary for the activity of the cytokine, it was proposed that it protects the cytokine from proteolytic degradation and thus extends its circulatory half-life. Here, we report the development of model structures of glycosylated full-length native hIFNγ homodimers. Our aim is to shed light on the mechanism through which glycosylation preserves the integrity of the cytokine molecule. To this end, we employ molecular dynamics simulations to study the interaction of the carbohydrate chains with the receptor-binding sites in the cytokine and with its flexible highly positively charged C-termini. The glycans interact primarily with the globular part of the protein, but also occasionally form contacts with the solvent-exposed and sensitive to proteases C-terminal tails. We show that the glycans restrict the C-termini wagging motion into the solvent, limit their flexibility and keep them closer to the α-helical globule of hIFNγ, thus possibly protecting them from proteolytic processing.

Indexed as

Models, MolecularMolecular Dynamics SimulationProtein Conformation, alpha-HelicalGlycoproteinsGlycosylationHumansInterferon-gammaPolysaccharidesProteolysisGlycoproteinsIFNG protein, humanInterferon-gammaPolysaccharidesGlycan–protein interactionsGlycosylationHuman interferon-gamma (hIFNγ)Molecular dynamics simulations

Identifiers

PMID31025190
OpenAlexW2941233831

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.