Evidence map›Paper›PMID 31023147›Full record

ArticleRNA biology2019

Circbank: a comprehensive database for circRNA with standard nomenclature.

Ming Liu, Qian Wang, Jian Shen, Burton B Yang, Xiangming Ding

Abstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 319 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
319citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

319 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  14. Tumor-suppressive circRNAs in colorectal cancer spheroids and patients.Journal of the Chinese Medical Association : JCMA · 2026
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  18. Whole genome circRNA profiling ofDrug metabolism and personalized therapy · 2026
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259 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ming Liua Department of Bioinformatics , ATCGene Inc , Guangzhou , China.
Qian Wangb Department of Computer Science and Information Engineering , Guangdong Vocational College of Industry and Commerce , Guangzhou , China.
Jian Shena Department of Bioinformatics , ATCGene Inc , Guangzhou , China.
Burton B Yangc Sunnybrook Research Institute , Sunnybrook Health Sciences Centre , Toronto , Canada.
Xiangming Dinga Department of Bioinformatics , ATCGene Inc , Guangzhou , China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circular RNAs (circRNAs) represent a new type of regulatory RNA which forms a covalently closed continuous loop from back-splicing events, a process in which the downstream 5' splice site and the 3' splice site are covalently linked. Emerging evidence indicates that circRNAs exert a new layer of transcriptional and post-transcriptional regulation of gene expression. However, there is no standard nomenclature of circRNA, although the study of circRNAs has exploded in the past few years. Here we present circbank ( www.circbank.cn ), a comprehensive database for human circRNAs, where a novel naming system of circRNAs based on the host genes of circRNAs was implemented. In addition to the new naming system, circbank collected other five features of circRNAs including the miRNA binding site, conservation of circRNAs, m

Indexed as

Databases, GeneticTerminology as TopicBinding SitesConserved SequenceMicroRNAsOpen Reading FramesRNARNA, CircularMicroRNAsRNARNA, CircularcircbankCircRNAsdatabasenomenclature

Identifiers

PMID31023147
PMCPMC6546381

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.