Evidence map›Paper›PMID 31022491›Full record

ArticleInternational journal of biological macromolecules2019

The role of G-quadruplex structures of LIGS-generated aptamers R1.2 and R1.3 in IgM specific recognition.

Federica Moccia, Chiara Platella, Domenica Musumeci, Sana Batool, Hasan Zumrut, John Bradshaw, Prabodhika Mallikaratchy, Daniela Montesarchio

Abstract read
In one paragraph

Article in International journal of biological macromolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  3. Review
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  6. Review
  7. Article
  8. Selection of RNA aptamers targeting hypoxia in cancer.Frontiers in molecular biosciences · 2022
    Article
  9. Artificial Intelligence in Aptamer-Target Binding Prediction.International journal of molecular sciences · 2021
    Review
  10. Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins.International journal of molecular sciences · 2021
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Federica MocciaDepartment of Chemical Sciences, University of Naples Federico II, Via Cintia 21, I-80126 Napoli, Italy.
Chiara PlatellaDepartment of Chemical Sciences, University of Naples Federico II, Via Cintia 21, I-80126 Napoli, Italy.
Domenica MusumeciDepartment of Chemical Sciences, University of Naples Federico II, Via Cintia 21, I-80126 Napoli, Italy.
Sana BatoolDepartment of Chemistry, City University of New York - Lehman College, 250 Bedford Park Blvd. West, Bronx, New York, NY 10468, USA.
Hasan ZumrutPh.D. Program in Chemistry and Biochemistry, CUNY Graduate Center, 365 Fifth Avenue, New York, NY 10016, USA.
John BradshawDepartment of Chemistry, City University of New York - Lehman College, 250 Bedford Park Blvd. West, Bronx, New York, NY 10468, USA.
Prabodhika MallikaratchyDepartment of Chemistry, City University of New York - Lehman College, 250 Bedford Park Blvd. West, Bronx, New York, NY 10468, USA; Ph.D. Program in Chemistry and Biochemistry, CUNY Graduate Center, 365 Fifth Avenue, New York, NY 10016, USA; Ph.D. Program in Molecular, Cellular and Developmental Biology, CUNY Graduate Center, 365 Fifth Avenue, New York, NY 10016, USA. Electronic address: prabodhika.mallikaratchy@lehman.cuny.edu.
Daniela MontesarchioDepartment of Chemical Sciences, University of Naples Federico II, Via Cintia 21, I-80126 Napoli, Italy. Electronic address: daniela.montesarchio@unina.it.

Funding

Ligand Guided Selection of Aptamers against Human Leukemia and LymphomaSC1GM122648 · NIGMS · HERBERT H. LEHMAN COLLEGE · PI MALLIKARATCHY, PRABODHIKA · 2017 to 2020
$1.5M
NIGMS NIH HHS SC1 GM122648
6 · The paper itself

Abstract

Exploiting a variant of SELEX called "Ligand-Guided Selection" (LI-GS), we recently identified two novel truncated G-rich aptamers, called R1.2 and R1.3, specific for membrane-bound IgM (mIgM), the hallmark of B cells. Herein, the conformational behaviour of these aptamers has been analysed by multiple biophysical methods. In order to investigate their functional secondary structures, these studies have been carried out in pseudo-physiological buffers mimicking different cellular environments. Both aptamers proved to be highly polymorphic, folding into stable, unimolecular G-quadruplex structures in K

Indexed as

G-QuadruplexesAptamers, NucleotideComputer SimulationHumansImmunoglobulin MAptamers, NucleotideImmunoglobulin MAptamersG-quadruplexMembrane-bound IgM

Identifiers

PMID31022491
PMCPMC6548653

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.