Evidence map›Paper›PMID 31022263›Full record

ArticlePloS one2019

RNA-sequencing analysis reveals betalains metabolism in the leaf of Amaranthus tricolor L.

Shengcai Liu, Xueli Zheng, Junfei Pan, Liyun Peng, Chunzhen Cheng, Xiao Wang, Chunli Zhao, Zihao Zhang, Yuling Lin, Xu XuHan and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Shengcai LiuInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Xueli ZhengInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Junfei PanInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Liyun PengInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Chunzhen ChengInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Xiao WangInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Chunli ZhaoInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Zihao ZhangInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Yuling LinInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Xu XuHanInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.
Zhongxiong LaiInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.ORCID 0000-0002-8523-621X
Fujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amaranth plants contain large amounts of betalains, including betaxanthins and betacyanins. Amaranthin is a betacyanin, and its molecular structure and associated metabolic pathway differ from those of betanin in beet plants. The chlorophyll, carotenoid, betalain, and flavonoid contents in amaranth leaves were analyzed. The abundance of betalain, betacyanin, and betaxanthin was 2-5-fold higher in the red leaf sectors than in the green leaf sectors. Moreover, a transcriptome database was constructed for the red and green sectors of amaranth leaves harvested from 30-day-old seedlings. 22 unigenes were selected to analyze the expression profiles in the two leaf sectors. The RNA-sequencing data indicated that many unigenes are involved in betalain metabolic pathways. The potential relationships between diverse metabolic pathways and betalain metabolism were analyzed. The validation of the expression of 22 selected unigenes in a qRT-PCR assay revealed the genes that were differentially expressed in the two leaf sectors. Betalains were biosynthesized in specific tissues of the red sectors of amaranth leaves. Almost all of the genes related to betalain metabolism were identified in the transcriptome database, and the expression profiles were different between the red sectors and green sectors in the leaf. Amaranth plants consist of diverse metabolic pathways, and the betalain metabolic pathway is linked to a group of other metabolic pathways.

Indexed as

AmaranthusBetalainsCarotenoidsChlorophyllFlavonoidsGene Expression Regulation, PlantGene OntologyGenes, PlantMolecular Sequence AnnotationPlant LeavesSequence Analysis, RNATranscriptomeBetalainsCarotenoidsChlorophyllFlavonoids

Identifiers

PMID31022263
PMCPMC6483260
OpenAlexW2942016551

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.