Evidence map›Paper›PMID 31021519›Full record

ReviewHuman mutation2019

Mutation update for the SATB2 gene.

Yuri A Zarate, Katherine A Bosanko, Aisling R Caffrey, Jonathan A Bernstein, Donna M Martin, Marc S Williams, Elizabeth M Berry-Kravis, Paul R Mark, Melanie A Manning, Vikas Bhambhani and 38 more

Open access · bronzeAbstract readReview
In one paragraph

Review in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Microcephaly GeneInternational journal of molecular sciences · 2024
    Article
  11. Review
  12. Genes · 2023
    Review
  13. Article
  14. Review
  15. Regional specific differentiation of integumentary organs: SATB2 is involved in α- and β-keratin gene cluster switching in the chicken.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

48 authors at 20 institutions in 9 countries.

Yuri A ZarateSection of Genetics and Metabolism, Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Katherine A BosankoSection of Genetics and Metabolism, Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Aisling R CaffreyHealth Outcomes, College of Pharmacy, Department of Pharmacy Practice, University of Rhode Island, Kingston, Rhode Island.
Jonathan A BernsteinDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California.
Donna M MartinDepartments of Pediatrics and Human Genetics, The University of Michigan, Ann Arbor, Michigan.
Marc S WilliamsGenomic Medicine Institute, Geisinger, Danville, Pennsylvania.
Elizabeth M Berry-KravisDepartments of Pediatrics, Neurological Sciences, Biochemistry, Rush University Medical Center, Chicago, Illinois.
Paul R MarkDivision of Medical Genetics, Spectrum Health, Grand Rapids, Michigan.
Melanie A ManningDepartments of Pathology and Pediatrics, Stanford University School of Medicine, Stanford, California.
Vikas BhambhaniDivision of Genetics and Genomic Medicine, Children's Hospital and Clinics of Minnesota, Minneapolis, Minnesota.
Marcelo VargasDivision of Genetics and Genomic Medicine, Children's Hospital and Clinics of Minnesota, Minneapolis, Minnesota.
Andrea H SeeleyGenomic Medicine Institute, Geisinger, Danville, Pennsylvania.
Juvianee I Estrada-VerasMurtha Cancer Center Research Program, The Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc, Bethesda, Maryland.
Marieke F van DoorenDepartment of Clinical Genetics, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Maria SchwabGenetics Division, Joseph Sanzari Children's Hospital, Hackensack University Medical Center, Hackensack, New Jersey.
Adeline VanderverDivision of Neurology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Daniela MelisDepartment of Translational Medical Science, Section of Pediatrics, Federico II University, Naples, Italy.
Adnan AlsadahCenter for Personalized Genetic Healthcare, Genomic Medicine Institute, Cleveland Clinic, Cleveland, Ohio.
Laurie SadlerDivision of Genetics, Oishei Children's Hospital, Jacobs School of Medicine and Biomedical Sciences, University of Buffalo, Buffalo, New York.
Hilde Van EschDepartment of Human Genetics, University Hospitals Leuven, KU, Leuven, Belgium.
Bert CallewaertCenter for Medical Genetics, Ghent University Hospital, Ghent, Belgium.
Ann OostraDepartment of Pediatric Neurology, Ghent University Hospital, Ghent, Belgium.
Jane MacleanPediatric Neurology, Palo Alto Medical Foundation, San Jose, California.
Maria Lisa DenticiMedical Genetics, Academic Department of Pediatrics, Ospedale Pediatrico Bambino Gesù, IRCCS, Rome, Italy.
Valeria OrlandoGenetics and Rare Diseases Research Division, Bambino Gesù Children's Hospital, IRCCS, Rome, Italy.
Mark LipsonDepartment of Genetics, Kaiser Permanente, Sacramento, California.
Steven P SparaganaDepartment of Neurology, Texas Scottish Rite Hospital for Children, Dallas, Texas.
Timothy J MaarupDepartment of Genetics, Kaiser Permanente, Los Angeles, California.
Suzanne Im AlstersDepartment of Clinical Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Ariel BrautbarDepartment of Genetics, Cook Chldren's Medical Center, Fort Worth, Texas.
Eliana KovitchPANDA Neurology, Atlanta, Georgia.
Sakkubai NaiduDepartment of Neurogenetics, Kennedy Krieger Institute, Baltimore, Maryland.
Melissa LeesDepartment of Clinical Genetics, Great Ormond Street Hospital for Children, London, UK.
Douglas M SmithMinnesota Epilepsy Group, Saint Paul, Minnesota.
Lesley TurnerDiscipline of Genetics, Faculty of Medicine, Memorial University, St. John's, Newfoundland, Canada.
Víctor RaggioDepartamento de Genética, Facultad de Medicina, Montevideo, Uruguay.
Lucía SpangenbergUnidad de Bioinformática, Institut Pasteur, Montevideo, Uruguay.
Sixto Garcia-MiñaúrDepartment of Medical Genetics, Hospital Universitario La Paz, Madrid, Spain.
Elizabeth R RoederDepartment of Pediatrics, Baylor College of Medicine, San Antonio, Texas.
Rebecca O LittlejohnDepartment of Pediatrics, Baylor College of Medicine, San Antonio, Texas.
Dorothy GrangeDivision of Genetics and Genomic Medicine, Department of Pediatrics, Washington University School of Medcine, St Louis, Missouri.
Jean PfotenhauerDivision of Medical Genetics and Genomic Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Marilyn C JonesDivision of Genetics, Department of Pediatrics, University of California, San Diego and Rady Children's Hospital, San Diego, California.
Meena BalasubramanianSheffield Clinical Genetics Service, Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield, UK.
Antonio Martinez-MonsenyGenetics and Molecular Medicine Department, Rare Disease Pediatric Unit, Hospital Sant Joan de Déu, Barcelona, Spain.
Lot Snijders BlokHuman Genetics Department, Radboud University Medical Center, Nijmegen, The Netherlands.
Ralitza GavrilovaDepartments of Neurology and Clinical Genomics, Mayo Clinic, Rochester, Minnesota.
Jennifer L FishDepartment of Biological Sciences, University of Massachusetts Lowell, Lowell, Massachusetts.
Bambino Gesù Children's Hospital · ITBaylor College of Medicine · USChildren’s Minnesota - St. Paul Hospital · USGeisinger Neuroscience Institute · USGhent University Hospital · BEKaiser Permanente · USUniversity of Arkansas for Medical Sciences · USAmsterdam University Medical Centers · NLCenter for Human Genetics · USChengdu Research Base of Giant Panda Breeding · CNChildren's Hospital of Philadelphia · USCleveland Clinic · USErasmus MC · NLFederico II University Hospital · ITGreat Ormond Street Hospital · GBHackensack University Medical Center · USHenry M. Jackson Foundation · USHospital Sant Joan de Déu Barcelona · ESHospital Universitario La Paz · ESInstitut Pasteur de Montevideo · UY

Funding

Validation of the GMFC-MLDU54NS115052 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI Laura Ann Adang, FLORIAN S EICHLER · 2019 to 2026
$14.3M
NINDS NIH HHS U54 NS115052
6 · The paper itself

Abstract

SATB2-associated syndrome (SAS) is an autosomal dominant neurodevelopmental disorder caused by alterations in the SATB2 gene. Here we present a review of published pathogenic variants in the SATB2 gene to date and report 38 novel alterations found in 57 additional previously unreported individuals. Overall, we present a compilation of 120 unique variants identified in 155 unrelated families ranging from single nucleotide coding variants to genomic rearrangements distributed throughout the entire coding region of SATB2. Single nucleotide variants predicted to result in the occurrence of a premature stop codon were the most commonly seen (51/120 = 42.5%) followed by missense variants (31/120 = 25.8%). We review the rather limited functional characterization of pathogenic variants and discuss current understanding of the consequences of the different molecular alterations. We present an expansive phenotypic review along with novel genotype-phenotype correlations. Lastly, we discuss current knowledge of animal models and present future prospects. This review should help provide better guidance for the care of individuals diagnosed with SAS.

Indexed as

MutationAdolescentAnimalsChildChild, PreschoolCodon, TerminatorDisease Models, AnimalFemaleGene RearrangementGenetic Association StudiesHumansMaleMatrix Attachment Region Binding ProteinsMutation, MissenseNeurodevelopmental DisordersPolymorphism, Single NucleotideCodon, TerminatorMatrix Attachment Region Binding ProteinsSATB2 protein, humanTranscription Factorsgenotype-phenotype correlationpathogenic variantsSATB2SATB2-associated syndromewhole exome sequencing

Identifiers

PMID31021519
PMCPMC11431158
OpenAlexW2940582390

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.