Evidence map›Paper›PMID 31019089›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Overlooked roles of DNA damage and maternal age in generating human germline mutations.

Ziyue Gao, Priya Moorjani, Thomas A Sasani, Brent S Pedersen, Aaron R Quinlan, Lynn B Jorde, Guy Amster, Molly Przeworski

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 236 citations in OpenAlex.

  1. Dynamics of mutators of arbitrary dominance in humans.bioRxiv : the preprint server for biology · 2026
    Article
  2. Review
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  7. AScience advances · 2026
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  9. Review
  10. Evolution of the highest fidelity DNA replication systems.bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. A sibling study of variation in parental mutation rates.bioRxiv : the preprint server for biology · 2026
    Article
  14. Article
  15. Article
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  19. Article
  20. What sets the mutation rate of a cell type in an animal species?bioRxiv : the preprint server for biology · 2025
    Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Ziyue GaoHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305; ziyuegao@stanford.edu mp3284@columbia.edu.ORCID 0000-0001-9244-0238
Priya MoorjaniDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Thomas A SasaniDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112.
Brent S PedersenDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112.
Aaron R QuinlanDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112.
Lynn B JordeDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112.
Guy AmsterDepartment of Biological Sciences, Columbia University, New York, NY 10027.ORCID 0000-0002-9108-5200
Molly PrzeworskiDepartment of Biological Sciences, Columbia University, New York, NY 10027; ziyuegao@stanford.edu mp3284@columbia.edu.
University of Utah · USColumbia University · USHoward Hughes Medical Institute · USUniversity of California, Berkeley · US

Funding

POPULATION GENETICS OF MOBILE ELEMENTSR01GM059290 · NIGMS · UNIVERSITY OF UTAH · PI BATZER, MARK A, FESCHOTTE, CEDRIC · 1999 to 2018
$8.5M
Integration of genetic association mapping and functional data to elucidate genetic mechanisms of diseaseR01HG008140 · NHGRI · STANFORD UNIVERSITY · PI JONATHAN K PRITCHARD · 2016 to 2026
$7.3M
TRAINING PROGRAM IN GENETICST32GM007464 · NIGMS · UNIVERSITY OF UTAH · PI GRUNWALD, DAVID J., STANFIELD, GILLIAN · 1985 to 2020
$6.1M
Human Genetic Variation and DiseaseR35GM118335 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI JORDE, LYNN · 2016 to 2025
$5.1M
Monitoring tumor subclonal heterogeneity over time and spaceU24CA209999 · NCI · UNIVERSITY OF UTAH · PI MARTH, GABOR T, QUINLAN, AARON R · 2016 to 2020
$3.9M
Decoding the regulatory architecture of the human genome across cell types, individuals and diseaseU01HG009431 · NHGRI · STANFORD UNIVERSITY · PI PRITCHARD, JONATHAN K · 2017 to 2021
$3.5M
New algorithms and tools for large-scale genomic analysesR01HG006693 · NHGRI · UNIVERSITY OF VIRGINIA · PI QUINLAN, AARON R · 2012 to 2018
$3.1M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
VAAST+: Tool for variant prioritization, risk assessment and disease-gene findingR01GM104390 · NIGMS · UNIVERSITY OF UTAH · PI JORDE, LYNN, YANDELL, MARK DOUGLAS · 2013 to 2017
$2.2M
Software for exploring all forms of genetic variation in any speciesR01GM124355 · NIGMS · UNIVERSITY OF UTAH · PI QUINLAN, AARON R · 2017 to 2020
$1.8M
Mutation rate variation in primatesR01GM122975 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRZEWORSKI, MOLLY F · 2017 to 2020
$1.6M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NCI NIH HHS U24 CA209999NHGRI NIH HHS R01 HG006693NHGRI NIH HHS R01 HG008140NHGRI NIH HHS R01 HG009141NHGRI NIH HHS U01 HG009431NIGMS NIH HHS R01 GM059290NIGMS NIH HHS R01 GM104390NIGMS NIH HHS R01 GM122975NIGMS NIH HHS R01 GM124355NIGMS NIH HHS R35 GM118335NIGMS NIH HHS T32 GM007464NIH HHS S10 OD020069
6 · The paper itself

Abstract

The textbook view that most germline mutations in mammals arise from replication errors is indirectly supported by the fact that there are both more mutations and more cell divisions in the male than in the female germline. When analyzing large de novo mutation datasets in humans, we find multiple lines of evidence that call that view into question. Notably, despite the drastic increase in the ratio of male to female germ cell divisions after the onset of spermatogenesis, even young fathers contribute three times more mutations than young mothers, and this ratio barely increases with parental age. This surprising finding points to a substantial contribution of damage-induced mutations. Indeed, C-to-G transversions and CpG transitions, which together constitute over one-fourth of all base substitution mutations, show genomic distributions and sex-specific age dependencies indicative of double-strand break repair and methylation-associated damage, respectively. Moreover, we find evidence that maternal age at conception influences the mutation rate both because of the accumulation of damage in oocytes and potentially through an influence on the number of postzygotic mutations in the embryo. These findings reveal underappreciated roles of DNA damage and maternal age in the genesis of human germline mutations.

Indexed as

Databases, Nucleic AcidDNA Breaks, Double-StrandedDNA RepairGerm-Line MutationMaternal AgeAdolescentAdultFemaleHumansMaleMiddle AgedOocytesPregnancySpermatogenesisDNA damage and repairDNA replicationgermline mutationmale mutation biasmaternal age effect

Identifiers

PMID31019089
PMCPMC6511033
OpenAlexW2949269627

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.