Evidence map›Paper›PMID 31019072›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Genome-wide CRISPR screen for Zika virus resistance in human neural cells.

Yun Li, Julien Muffat, Attya Omer Javed, Heather R Keys, Tenzin Lungjangwa, Irene Bosch, Mehreen Khan, Maria C Virgilio, Lee Gehrke, David M Sabatini and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 1 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 1 synthesis or guideline pooled it, 124 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Druggable genome screens identify SPP as an antiviral host target for multiple flaviviruses.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Functional Roles and Host Interactions ofPathogens (Basel, Switzerland) · 2025
    Review
  13. Review
  14. Computational Analysis of Virus-Host Interactomes.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Zika Virus Neuropathogenesis-Research and Understanding.Pathogens (Basel, Switzerland) · 2024
    Review
  20. CRISPRi: a way to integrate iPSC-derived neuronal models.Biochemical Society transactions · 2024
    Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Yun LiWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Julien MuffatWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Attya Omer JavedWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Heather R KeysWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Tenzin LungjangwaWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Irene BoschInstitute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139.
Mehreen KhanWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Maria C VirgilioWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Lee GehrkeInstitute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139.
David M SabatiniWhitehead Institute for Biomedical Research, Cambridge, MA 02142.ORCID 0000-0002-1446-7256
Rudolf JaenischWhitehead Institute for Biomedical Research, Cambridge, MA 02142; jaenisch@wi.mit.edu.
Whitehead Institute for Biomedical Research · USHarvard University · USUniversity of Toronto · CABroad Institute · USUniversité Paris-Saclay · FR

Funding

PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
Virology Core: MIT Center for Human Tissue Models for Infectious Diseases (MIT.HTMID)U19AI131135 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 2017 to 2021
$8.7M
Transcriptional condensates, epigenetic editing and Rett SyndromeR01MH104610 · NIMH · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF, YOUNG, RICHARD · 2014 to 2023
$7.4M
An iPSC based platform for functionally assessing genetic and environmental riskR01NS088538 · NINDS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF, MYERS, RICHARD H · 2014 to 2018
$5.0M
MMDx: A rapid multiplexed matrix code diagnostic for real time epidemiologyR33AI100190 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 2014 to 2016
$1.6M
Howard Hughes Medical InstituteNIAID NIH HHS R33 AI100190NIAID NIH HHS U19 AI131135NIGMS NIH HHS T32 GM007287NIMH NIH HHS R01 MH104610NINDS NIH HHS R01 NS088538
6 · The paper itself

Abstract

Zika virus (ZIKV) is a neurotropic and neurovirulent arbovirus that has severe detrimental impact on the developing human fetal brain. To date, little is known about the factors required for ZIKV infection of human neural cells. We identified ZIKV host genes in human pluripotent stem cell (hPSC)-derived neural progenitors (NPs) using a genome-wide CRISPR-Cas9 knockout screen. Mutations of host factors involved in heparan sulfation, endocytosis, endoplasmic reticulum processing, Golgi function, and interferon activity conferred resistance to infection with the Uganda strain of ZIKV and a more recent North American isolate. Host genes essential for ZIKV replication identified in human NPs also provided a low level of protection against ZIKV in isogenic human astrocytes. Our findings provide insights into host-dependent mechanisms for ZIKV infection in the highly vulnerable human NP cells and identify molecular targets for potential therapeutic intervention.

Indexed as

CRISPR-Cas SystemsAstrocytesCell LineDisease ResistanceFemaleGenome-Wide Association StudyHumansMaleNeural Stem CellsVirus ReplicationZika VirusZika Virus InfectionCRISPR screenfetal CNS infectionhuman pluripotent stem cellsneural progenitorsZika virus

Identifiers

PMID31019072
PMCPMC6510995
OpenAlexW2941755333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.