Evidence map›Paper›PMID 31016883›Full record

ArticleMolecular genetics & genomic medicine2019

Identification of a complex genomic rearrangement in TMPRSS3 by massively parallel sequencing in Chinese cases with prelingual hearing loss.

Xinlei Li, Bo Tan, Xiaoqian Wang, Xiaofei Xu, Cuicui Wang, Mingjun Zhong, Qiuling Zhao, Zhongwei Bao, Weihua Peng, Lei Zhang and 4 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

  1. [Late-onset hereditary hearing loss caused byLin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Xinlei LiMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.ORCID 0000-0002-7307-9309
Bo TanMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Xiaoqian WangDepartment of Otorhinolaryngology Head and Neck Surgery, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China.
Xiaofei XuMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Cuicui WangMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Mingjun ZhongMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Qiuling ZhaoMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Zhongwei BaoMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Weihua PengMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Lei ZhangMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Jing ChengMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Yu LuMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.
Peina WuDepartment of Otorhinolaryngology Head and Neck Surgery, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China.
Huijun YuanMedical Genetics Center, Southwest Hospital, Army Medical University, Chongqing, China.ORCID 0000-0002-4173-7688
Army Medical University · CNGuangdong Academy of Medical Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenetic variants in TMPRSS3 have been causally linked to autosomal recessive nonsyndromic hearing loss (HL) at the DFNB8 and DFNB10 loci. These variants include both single nucleotide and copy number variations (CNVs). In this study, we aim to identify the genetic cause in three Chinese subjects with prelingual profound sensorineural HL.

methodsWe applied targeted genomic enrichment and massively parallel sequencing to screen 110 genes associated with nonsyndromic HL in the three affected subjects. CNVplex

resultsWe identified biallelic variations in TMPRSS3 including a novel complex genomic rearrangement and a novel missense mutation, c.551T>C. We have mapped the breakpoints of the genomic rearrangement and showed that it consisted of two deletions and an inversion encompassing exon 3 to exon 9 of TMPRSS3.

conclusionOur study expanded the mutational spectrum of TMPRSS3 to include complex genomic rearrangements. It showcased the importance of an integrative approach to investigate CNVs and their contribution to HL.

Indexed as

AdolescentChild, PreschoolChromosome BreakpointsDNA Copy Number VariationsFemaleGene RearrangementHearing Loss, SensorineuralHumansMaleMembrane ProteinsMutation, MissenseNeoplasm ProteinsSerine EndopeptidasesMembrane ProteinsNeoplasm ProteinsSerine EndopeptidasesTMPRSS3 protein, humancopy number variationhearing lossmassively parallel sequencingrearrangementTMPRSS3

Identifiers

PMID31016883
PMCPMC6565588
OpenAlexW2941569881

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.