Evidence map›Paper›PMID 31016693›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

Synthesis of Site-Specific Crown Ether Adducts to DNA Abasic Sites: 8-Oxo-7,8-Dihydro-2'-Deoxyguanosine and 2'-Deoxycytidine.

Na An, Aaron M Fleming, Nicole C Rosecrans, Yi Liao, Cynthia J Burrows

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Na AnDepartment of Chemistry, University of Utah, Salt Lake City, UT, USA.
Aaron M FlemingDepartment of Chemistry, University of Utah, Salt Lake City, UT, USA.
Nicole C RosecransDepartment of Chemistry, University of Utah, Salt Lake City, UT, USA.
Yi LiaoDepartment of Chemistry, University of Utah, Salt Lake City, UT, USA.
Cynthia J BurrowsDepartment of Chemistry, University of Utah, Salt Lake City, UT, USA. burrows@chem.utah.edu.

Funding

99.99% Accuracy Direct DNA Sequencing via the Protein Nanopore MethodR01HG005095 · NHGRI · ELECTRONIC BIOSCIENCES, INC. · PI BARRALL, GEOFFREY · 2009 to 2012
$4.8M
Nanopore Detection of DNA DamageR01GM093099 · NIGMS · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J · 2011 to 2021
$3.0M
NHGRI NIH HHS R01 HG005095NIGMS NIH HHS R01 GM093099
6 · The paper itself

Abstract

Formation of adducts to DNA is of great benefit to DNA sequencing and damage detection technology and to enzymology. Here we describe the synthesis and characterization procedures of 18-crown-6 adducts formed to abasic (AP) sites, 8-oxo-7,8-dihydro-2'-deoxyguanosine (OG), and 2'-deoxycytidine (C) residues in DNA oligodeoxynucleotides. These crown ether adducts were used as site-specific modifications to facilitate nanopore technology. The methods described can be readily expanded to attach other suitable primary amines of interest.

Indexed as

8-Hydroxy-2'-DeoxyguanosineCrown EthersDeoxycytidineDeoxyguanosineDNADNA AdductsNanoporesOligodeoxyribonucleotides15-crown-518-crown-68-Hydroxy-2'-DeoxyguanosineCrown EthersDeoxycytidineDeoxyguanosineDNADNA AdductsOligodeoxyribonucleotides18-crown-62′-Deoxycytidine8-Oxo-7,8-dihydro-2′-deoxyguanosineAbasic sitesDNA adductsDNA sequencingSite-specific chemistry

Identifiers

PMID31016693
PMCPMC6482849

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.