Evidence map›Paper›PMID 31016231›Full record

ArticleNPJ Parkinson's disease2019

Moving beyond neurons: the role of cell type-specific gene regulation in Parkinson's disease heritability.

Regina H Reynolds, Juan Botía, Mike A Nalls, International Parkinson’s Disease Genomics Consortium (IPDGC), System Genomics of Parkinson’s Disease (SGPD), John Hardy, Sarah A Gagliano Taliun, Mina Ryten

Open access · goldAbstract read
In one paragraph

Article in NPJ Parkinson's disease, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 111 citations in OpenAlex.

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  14. bioRxiv : the preprint server for biology · 2024
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  20. Artificial intelligence for dementia genetics and omics.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2023
    Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 20 institutions in 15 countries.

Regina H Reynolds1Department of Neurodegenerative Disease, University College London (UCL) Institute of Neurology, London, UK.ORCID 0000-0001-6470-7919
Juan Botía1Department of Neurodegenerative Disease, University College London (UCL) Institute of Neurology, London, UK.
Mike A Nalls3Laboratory of Neurogenetics, National Institute on Aging, US National Institutes of Health, Bethesda, Maryland USA.
International Parkinson’s Disease Genomics Consortium (IPDGC)
System Genomics of Parkinson’s Disease (SGPD)
John Hardy1Department of Neurodegenerative Disease, University College London (UCL) Institute of Neurology, London, UK.
Sarah A Gagliano Taliun *6Center for Statistical Genetics and Department of Biostatistics, University of Michigan, Ann Arbor, Michigan USA.
Mina Ryten *1Department of Neurodegenerative Disease, University College London (UCL) Institute of Neurology, London, UK.
Instituto de Biomedicina de Sevilla · ESUniversity College London · GBThe University of Queensland · AUNational Institutes of Health · USHospital Clínic de Barcelona · ESGerman Center for Neurodegenerative Diseases · DEUniversity Hospital Mútua de Terrassa · ESBiogipuzkoa Health Research Institute · ESCentre National de la Recherche Scientifique · FRHospital Universitario Central de Asturias · ESThe University of Sydney · AUUniversitat Autònoma de Barcelona · ESGriffith University · AUHospital General De Segovia · ESHospital Universitario Ramón y Cajal · ESInstituto de Investigación Marqués de Valdecilla · ESMRC Prion Unit · GBUK Dementia Research Institute · GBUniversidad de Granada · ESUniversity of Liverpool · GB

Funding

Medical Research Council G0701075Medical Research Council G0901254Medical Research Council MR/K01417X/1Medical Research Council MR/N008324/1Medical Research Council MR/N026004/1Parkinson's UK G-0907
6 · The paper itself

Abstract

Parkinson's disease (PD), with its characteristic loss of nigrostriatal dopaminergic neurons and deposition of α-synuclein in neurons, is often considered a neuronal disorder. However, in recent years substantial evidence has emerged to implicate glial cell types, such as astrocytes and microglia. In this study, we used stratified LD score regression and expression-weighted cell-type enrichment together with several brain-related and cell-type-specific genomic annotations to connect human genomic PD findings to specific brain cell types. We found that PD heritability attributable to common variation does not enrich in global and regional brain annotations or brain-related cell-type-specific annotations. Likewise, we found no enrichment of PD susceptibility genes in brain-related cell types. In contrast, we demonstrated a significant enrichment of PD heritability in a curated lysosomal gene set highly expressed in astrocytic, microglial, and oligodendrocyte subtypes, and in LoF-intolerant genes, which were found highly expressed in almost all tested cellular subtypes. Our results suggest that PD risk loci do not lie in specific cell types or individual brain regions, but rather in global cellular processes detectable across several cell types.

Indexed as

NeuroscienceParkinson's disease

Identifiers

PMID31016231
PMCPMC6470136
OpenAlexW2952898251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.