Evidence map›Paper›PMID 31015609›Full record

ArticleNature biomedical engineering2017

Ectopic expression of RAD52 and dn53BP1 improves homology-directed repair during CRISPR-Cas9 genome editing.

Bruna S Paulsen, Pankaj K Mandal, Richard L Frock, Baris Boyraz, Rachita Yadav, Srigokul Upadhyayula, Paula Gutierrez-Martinez, Wataru Ebina, Anders Fasth, Tomas Kirchhausen and 4 more

Abstract read
In one paragraph

Article in Nature biomedical engineering, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 116 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Recent advances in therapeutic gene-editing technologies.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  11. Article
  12. Article
  13. Promotion or inhibition? This is a question in gene editing.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  14. Article
  15. Review
  16. Review
  17. Engineering single-cycle MeV vector for CRISPR-Cas9 gene editing.Molecular therapy. Methods & clinical development · 2024
    Article
  18. Article
  19. Article
  20. Precise Gene Knock-In Tools with Minimized Risk of DSBs: A Trend for Gene Manipulation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Bruna S PaulsenDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138, USA.
Pankaj K MandalDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138, USA.ORCID 0000-0003-1993-9918
Richard L FrockProgram in Cellular and Molecular Medicine at Boston Children's Hospital, Boston, MA, 02115, USA.
Baris BoyrazDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, 02115, USA.
Rachita YadavMolecular Neurogenetics Unit, Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, 02114, USA.
Srigokul UpadhyayulaProgram in Cellular and Molecular Medicine at Boston Children's Hospital, Boston, MA, 02115, USA.
Paula Gutierrez-MartinezDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138, USA.ORCID 0000-0003-0442-1710
Wataru EbinaDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138, USA.
Anders FasthDepartment of Pediatrics, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Tomas KirchhausenProgram in Cellular and Molecular Medicine at Boston Children's Hospital, Boston, MA, 02115, USA.
Michael E TalkowskiMolecular Neurogenetics Unit, Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, 02114, USA.
Suneet AgarwalDepartment of Pediatrics, Harvard Medical School, Boston, MA, 02115, USA.
Frederick W AltProgram in Cellular and Molecular Medicine at Boston Children's Hospital, Boston, MA, 02115, USA.
Derrick J RossiDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138, USA. derrick.rossi@childrens.harvard.edu.
Boston Children's Hospital · USBroad Institute · USUniversity of Gothenburg · SE

Funding

Mechanisms that Control IgH Variable Region Exon AssemblyR01AI020047 · NIAID · IMMUNE DISEASE INSTITUTE, INC. · PI ALT, FREDERICK W. · 1985 to 2025
$14.1M
Preclinical development of gene-edited human hematopoietic stem cellsU19HL129903 · NHLBI · HARVARD UNIVERSITY · PI ROSSI, DERRICK J. · 2015 to 2019
$11.5M
Integrating lipid genotyes and phenotypes in iPS derived hepatocytes/adipocytesU01HL107440 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI COWAN, CHAD ALBERT, DEO, RAHUL CHANDRAKANT · 2011 to 2015
$9.0M
Regulation of the telomerase RNA component in hematopoiesisR01DK107716 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI SUNEET AGARWAL · 2016 to 2026
$5.0M
Molecular Mechanisms of Class Switch RecombinationR01AI077595 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI ALT, FREDERICK W. · 2009 to 2018
$4.3M
Humanized Mouse Avatars for T1DUC4DK104218 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BREHM, MICHAEL ALLEN, DALEY, GEORGE Q · 2014 to 2014
$4.1M
Reprogramming committed blood cells to a hematopoietic stem cell fateR01HL107630 · NHLBI · IMMUNE DISEASE INSTITUTE, INC. · PI ROSSI, DERRICK J. · 2011 to 2015
$2.5M
NHLBI NIH HHS R01 HL107630NHLBI NIH HHS U01 HL107440NHLBI NIH HHS U19 HL129903NIAID NIH HHS R01 AI020047NIAID NIH HHS R01 AI077595NIDDK NIH HHS R01 DK107716NIDDK NIH HHS UC4 DK104218
6 · The paper itself

Abstract

Gene disruption by clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9) is highly efficient and relies on the error-prone non-homologous end-joining pathway. Conversely, precise gene editing requires homology-directed repair (HDR), which occurs at a lower frequency than non-homologous end-joining in mammalian cells. Here, by testing whether manipulation of DNA repair factors improves HDR efficacy, we show that transient ectopic co-expression of RAD52 and a dominant-negative form of tumour protein p53-binding protein 1 (dn53BP1) synergize to enable efficient HDR using a single-stranded oligonucleotide DNA donor template at multiple loci in human cells, including patient-derived induced pluripotent stem cells. Co-expression of RAD52 and dn53BP1 improves multiplexed HDR-mediated editing, whereas expression of RAD52 alone enhances HDR with Cas9 nickase. Our data show that the frequency of non-homologous end-joining-mediated double-strand break repair in the presence of these two factors is not suppressed and suggest that dn53BP1 competitively antagonizes 53BP1 to augment HDR in combination with RAD52. Importantly, co-expression of RAD52 and dn53BP1 does not alter Cas9 off-target activity. These findings support the use of RAD52 and dn53BP1 co-expression to overcome bottlenecks that limit HDR in precision genome editing.

Indexed as

CRISPR-Cas SystemsDNA RepairDNA Breaks, Double-StrandedDNA End-Joining RepairEctopic Gene ExpressionGene EditingHEK293 CellsHumansInduced Pluripotent Stem CellsRad52 DNA Repair and Recombination ProteinRecombinational DNA RepairTumor Suppressor p53-Binding Protein 1Rad52 DNA Repair and Recombination ProteinRAD52 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1

Identifiers

PMID31015609
PMCPMC6918705
OpenAlexW2763379845

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.