Evidence map›Paper›PMID 31015583›Full record

ArticleJournal of human genetics2019

Molecular assay for an intronic variant in NUP93 that causes steroid resistant nephrotic syndrome.

Rini Rossanti, Akemi Shono, Kenichiro Miura, Motoshi Hattori, Tomohiko Yamamura, Keita Nakanishi, Shogo Minamikawa, Junya Fujimura, Tomoko Horinouchi, China Nagano and 8 more

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Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

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0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Nucleoporin-associated steroid-resistant nephrotic syndrome.Pediatric nephrology (Berlin, Germany) · 2025
    Review
  4. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  5. Article
  6. Steroid-Resistant Nephrotic Syndrome Caused byJournal of clinical medicine · 2023
    Article
  7. A rare cause of steroid-resistant nephrotic syndrome - a case report.Central-European journal of immunology · 2023
    Article
  8. Article
  9. An introduction to dynamic nucleoporins inJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2022
    Review
  10. Article
  11. The Contribution ofFrontiers in medicine · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

18 authors.

Rini RossantiDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Akemi ShonoDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Kenichiro MiuraDepartment of Pediatric Nephrology, School of Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Motoshi HattoriDepartment of Pediatric Nephrology, School of Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Tomohiko YamamuraDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Keita NakanishiDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Shogo MinamikawaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Junya FujimuraDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Tomoko HorinouchiDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
China NaganoDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Nana SakakibaraDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Hiroshi KaitoDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Hiroaki NagaseDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Naoya MorisadaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Katsuhiko AsanumaDepartment of Nephrology, Chiba University Graduate School of Medicine, Chiba, Japan.
Masafumi MatsuoResearch Center for Locomotion Biology, Kobe Gakuin University, Kobe, Japan.
Kandai NozuDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan. nozu@med.kobe-u.ac.jp.
Kazumoto IijimaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Advances in molecular genetics have revealed that approximately 30% of cases with steroid-resistant nephrotic syndrome (SRNS) are caused by single-gene mutations. More than 50 genes are responsible for SRNS. One such gene is the nucleoporin, 93-KD (NUP93). Thus far, few studies have reported mutations of NUP93 in SRNS. Here, we describe an NUP93 biallelic mutation in a 9-year-old boy with focal segmental glomerular sclerosis (FSGS). Notably, one mutation comprised an intronic variant; we conducted in vivo and in vitro analysis to characterize this variant. We found two heterozygous mutations in NUP93: c.2137-18G>A in intron 19 and a novel nonsense mutation c.727A>T (p.Lys243*) in exon 8. We conducted RNA sequencing and in vitro splicing assays by using minigene construction, combined with protein expression analysis to determine the pathogenicity of the intronic variant. Both RNA sequencing and in vitro splicing assay showed exon 20-skipping by the intronic variant. In protein expression analysis, aberrant subcellular localization with small punctate vesicles in the cytoplasm was observed for the intronic variant. Taken together, we concluded that c.2137-18G>A was linked to pathogenicity due to aberrant splicing. NUP93 variants are quite rare; however, we have shown that even intronic variants in NUP93 can cause SRNS. This study provides a fundamental approach to validate the intronic variant, as well as new insights regarding the clinical spectrum of SRNS caused by rare gene variants.

Indexed as

MutationChildGlomerulosclerosis, Focal SegmentalHEK293 CellsHeLa CellsHeterozygoteHumansIntronsMaleNephrotic SyndromeNuclear Pore Complex ProteinsRNA SplicingSequence Analysis, RNAWhole Genome SequencingNuclear Pore Complex ProteinsNup93 protein, human

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.