Evidence map›Paper›PMID 31015521›Full record

ArticleScientific reports2019

User-defined morphogen patterning for directing human cell fate stratification.

Mary C Regier, Jacob J Tokar, Jay W Warrick, Lil Pabon, Erwin Berthier, David J Beebe, Kelly R Stevens

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Modeling development using hydrogels.Development (Cambridge, England) · 2023
    Article
  7. Microfluidic systems for modeling human development.Development (Cambridge, England) · 2022
    Article
  8. Engineering Heart Morphogenesis.Trends in biotechnology · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mary C RegierDepartment of Bioengineering, University of Washington, 98195, Seattle, USA.
Jacob J TokarDepartment of Biomedical Engineering, University of Wisconsin - Madison, 53706, Madison, USA.
Jay W WarrickDepartment of Biomedical Engineering, University of Wisconsin - Madison, 53706, Madison, USA.
Lil PabonInstitute for Stem Cell and Regenerative Medicine, University of Washington, 98109, Seattle, USA.ORCID http://orcid.org/0000-0003-3095-5011
Erwin BerthierDepartment of Chemistry, University of Washington, 98195, Seattle, USA.
David J BeebeDepartment of Biomedical Engineering, University of Wisconsin - Madison, 53706, Madison, USA.
Kelly R StevensDepartment of Bioengineering, University of Washington, 98195, Seattle, USA. ksteve@uw.edu.

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
Thermogenetic activation of engineered tissue for cardiac repairDP2HL137188 · NHLBI · UNIVERSITY OF WASHINGTON · PI STEVENS, KELLY R · 2016 to 2016
$2.6M
NCI NIH HHS P30 CA014520NHLBI NIH HHS DP2 HL137188NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

Concentration gradients of biochemical stimuli such as morphogens play a critical role in directing cell fate patterning across species and throughout development but are not commonly recapitulated in vitro. While in vitro biomolecule gradients have been generated using customized microfluidic platforms, broad implementation has been limited because these platforms introduce new variables to cell culture such as externally driven flow, culture in a specialized matrix, or extended time for in situ long range diffusion. Here we introduce a method that enables preforming and then transferring user-controlled gradients to cells in standard "open" cultures. Our gradient patterning devices are modular and decoupled from the culture substrate. We find that gradient generation and transfer are predictable by finite element modeling and that device and loading parameters can be used to tune the stimulus pattern. Furthermore, we demonstrate use of these devices to spatially define morphogen signal gradients and direct peri-gastrulation fate stratification of human pluripotent stem cells. This method for extrinsic application of biochemical signal gradients can thus be used to spatially influence cellular fate decisions in a user-controlled manner.

Indexed as

Cell Culture TechniquesBody PatterningCell DifferentiationCell LineCollagenDrug CombinationsFinite Element AnalysisGastrulationHumansHuman Umbilical Vein Endothelial CellsInduced Pluripotent Stem CellsLab-On-A-Chip DevicesLamininProteoglycansSignal TransductionCollagenDrug CombinationsLamininmatrigelProteoglycans

Identifiers

PMID31015521
PMCPMC6478938

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.