Evidence map›Paper›PMID 31013619›Full record

ArticleInternational journal of molecular sciences2019

mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides.

Vinothini Boopathi, Sathiyamoorthy Subramaniyam, Adeel Malik, Gwang Lee, Balachandran Manavalan, Deok-Chun Yang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 179 citations in OpenAlex.

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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Vinothini BoopathiGraduate School of Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Korea. vinothini9327@gmail.com.
Sathiyamoorthy SubramaniyamResearch and Development Center, Insilicogen Inc., Yongin-si 16954, Gyeonggi-do, Korea. moorthy@insilicogen.com.
Adeel MalikDepartment of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon 34134, Korea. adeel@procarb.org.ORCID 0000-0002-3453-6001
Gwang LeeDepartment of Physiology, Ajou University School of Medicine, Suwon 443380, Korea. glee@ajou.ac.kr.
Balachandran ManavalanDepartment of Physiology, Ajou University School of Medicine, Suwon 443380, Korea. bala@ajou.ac.kr.
Deok-Chun YangGraduate School of Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Korea. dcyang@khu.ac.kr.
Ajou University · KRKyung Hee University · KRChungnam National University · KRInsilicogen (South Korea) · KR

Funding

Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries 317007-3National Research Foundation of Korea 2018R1D1A1B07049572
6 · The paper itself

Abstract

Anticancer peptides (ACPs) are promising therapeutic agents for targeting and killing cancer cells. The accurate prediction of ACPs from given peptide sequences remains as an open problem in the field of immunoinformatics. Recently, machine learning algorithms have emerged as a promising tool for helping experimental scientists predict ACPs. However, the performance of existing methods still needs to be improved. In this study, we present a novel approach for the accurate prediction of ACPs, which involves the following two steps: (i) We applied a two-step feature selection protocol on seven feature encodings that cover various aspects of sequence information (composition-based, physicochemical properties and profiles) and obtained their corresponding optimal feature-based models. The resultant predicted probabilities of ACPs were further utilized as feature vectors. (ii) The predicted probability feature vectors were in turn used as an input to support vector machine to develop the final prediction model called mACPpred. Cross-validation analysis showed that the proposed predictor performs significantly better than individual feature encodings. Furthermore, mACPpred significantly outperformed the existing methods compared in this study when objectively evaluated on an independent dataset.

Indexed as

SoftwareSupport Vector MachineAntineoplastic AgentsChemical PhenomenaHumansPeptidesReproducibility of ResultsROC CurveWeb BrowserAntineoplastic AgentsPeptidesanticancer peptidesfeature selectionoptimal featuressequential forward searchsupport vector machine

Identifiers

PMID31013619
PMCPMC6514805
OpenAlexW2937145808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.