Evidence map›Paper›PMID 31013547›Full record

ArticleChembiochem : a European journal of chemical biology2019

Biocatalytic Reversal of Advanced Glycation End Product Modification.

Nam Y Kim, Tyler N Goddard, Seungjung Sohn, David A Spiegel, Jason M Crawford

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. The chemical language of protein glycation.Nature chemical biology · 2025
    Review
  4. Glycative stress as a cause of macular degeneration.Progress in retinal and eye research · 2024
    Review
  5. Review
  6. Advanced Glycation End Products: New Clinical and Molecular Perspectives.International journal of environmental research and public health · 2021
    Review
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Nam Y KimDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.
Tyler N GoddardDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.
Seungjung SohnDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.
David A SpiegelDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.
Jason M CrawfordDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.ORCID 0000-0002-7583-1242
Yale University · US

Funding

Yale Study Support Suite (YES3): Dashboard and Web Portal Software Supporting Research Workflow through integrated, customizable REDCap External ModulesP30AG021342 · NIA · YALE UNIVERSITY · PI Denise Esserman · 2002 to 2026
$37.9M
American Diabetes Association 1-17-VSN-04NIA NIH HHS P30 AG021342NIH HHS 5T32GM06754 3-12
6 · The paper itself

Abstract

Advanced glycation end products (AGEs) are a heterogeneous group of molecules that emerge from the condensation of sugars and proteins through the Maillard reaction. Despite a significant number of studies showing strong associations between AGEs and the pathologies of aging-related illnesses, it has been a challenge to establish AGEs as causal agents primarily due to the lack of tools in reversing AGE modifications at the molecular level. Herein, we show that MnmC, an enzyme involved in a bacterial tRNA-modification pathway, is capable of reversing the AGEs carboxyethyl-lysine (CEL) and carboxymethyl-lysine (CML) back to their native lysine structure. Combining structural homology analysis, site-directed mutagenesis, and protein domain dissection studies, we generated a variant of MnmC with improved catalytic properties against CEL in its free amino acid form. We show that this enzyme variant is also active on a CEL-modified peptidomimetic and an AGE-containing peptide that has been established as an authentic ligand of the receptor for AGEs (RAGE). Our data demonstrate that MnmC variants are promising lead catalysts toward the development of AGE-reversal tools and a better understanding of AGE biology.

Indexed as

BiocatalysisEscherichia coliEscherichia coli ProteinsGlycation End Products, AdvancedKineticsLysineMultienzyme ComplexesMutationProtein EngineeringSubstrate SpecificityEscherichia coli ProteinsGlycation End Products, AdvancedLysineMnmC protein, E coliMultienzyme ComplexesN(6)-carboxyethyllysineN(6)-carboxymethyllysineenzyme catalysisglycationoxidoreductasesprotein engineeringprotein modifications

Identifiers

PMID31013547
PMCPMC6768434
OpenAlexW2941644437

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.