Evidence map›Paper›PMID 31013084›Full record

ArticleThe journal of physical chemistry. B2019

Active-Site Glu165 Activation in Triosephosphate Isomerase and Its Deprotonation Kinetics.

Hua Deng, R Brian Dyer, Robert Callender

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. How enzymes harness highly unfavorable proton transfer reactions.Protein science : a publication of the Protein Society · 2021
    Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Hua DengDepartment of Biochemistry , Albert Einstein College of Medicine , Bronx, New York 10461 , United States.ORCID 0000-0002-9503-7572
R Brian DyerDepartment of Chemistry , Emory University , Atlanta , Georgia 30322 , United States.ORCID 0000-0002-0090-7580
Robert CallenderDepartment of Biochemistry , Albert Einstein College of Medicine , Bronx, New York 10461 , United States.
Albert Einstein College of Medicine · USEmory University · US

Funding

Proton Transfer Dynamics in Heme-Copper OxidasesP01GM068036 · NIGMS · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI CALLENDER, ROBERT · 2004 to 2018
$26.4M
EARLY EVENTS IN PROTEIN FOLDINGR01GM053640 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI DYER, RICHARD BRIAN · 1996 to 2022
$6.5M
NIGMS NIH HHS P01 GM068036NIGMS NIH HHS R01 GM053640
6 · The paper itself

Abstract

Triosephosphate isomerase (TIM) catalyzes the interconversion between dihydroxyacetone phosphate (DHAP) and d-glyceraldehyde 3-phosphate (GAP) via an enediol(ate) intermediate. The active-site residue Glu165 serves as the catalytic base during catalysis. It abstracts a proton from C1 carbon of DHAP to form the reaction intermediate and donates a proton to C2 carbon of the intermediate to form product GAP. Our difference Fourier transform infrared spectroscopy studies on the yeast TIM (YeTIM)/phosphate complex revealed a C═O stretch band at 1706 cm

Indexed as

ProtonsAmino Acid SequenceBacteriaBase SequenceCatalysisCatalytic DomainDihydroxyacetone PhosphateGlutamic AcidHumansKineticsPhosphatesPlanctomycetalesProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTriose-Phosphate IsomeraseDihydroxyacetone PhosphateGlutamic AcidPhosphatesProtonsSaccharomyces cerevisiae ProteinsTriose-Phosphate Isomerase

Identifiers

PMID31013084
PMCPMC6579534
OpenAlexW2942271499

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.