Evidence map›Paper›PMID 31011214›Full record

ArticleNature chemical biology2019

Disruption of endocytosis through chemical inhibition of clathrin heavy chain function.

Wim Dejonghe, Isha Sharma, Bram Denoo, Steven De Munck, Qing Lu, Kiril Mishev, Haydar Bulut, Evelien Mylle, Riet De Rycke, Mina Vasileva and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 116 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 5 countries.

Wim Dejonghe *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Isha Sharma *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Bram DenooDepartment of Organic and Macromolecular Chemistry, Ghent University, Ghent, Belgium.
Steven De MunckUnit for Structural Biology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
Qing LuDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-4703-3286
Kiril MishevDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-5849-8786
Haydar BulutDepartment of Biology, Chemistry and Pharmacy, Freie Universität Berlin, Berlin, Germany.
Evelien MylleDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Riet De RyckeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Mina VasilevaInstitute of Science and Technology, Klosterneuburg, Austria.
Daniel V SavatinDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Wim NerinckxCenter for Medical Biotechnology, VIB, Ghent, Belgium.
An StaesCenter for Medical Biotechnology, VIB, Ghent, Belgium.
Andrzej DrozdzeckiVIB Screening Core, Ghent, Belgium.
Dominique AudenaertVIB Screening Core, Ghent, Belgium.
Klaas YpermanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Annemieke MadderDepartment of Organic and Macromolecular Chemistry, Ghent University, Ghent, Belgium.
Jiří FrimlInstitute of Science and Technology, Klosterneuburg, Austria.ORCID http://orcid.org/0000-0002-8302-7596
Daniël Van DammeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-9385-4851
Kris GevaertCenter for Medical Biotechnology, VIB, Ghent, Belgium.
Volker HauckeDepartment of Molecular Pharmacology and Cell Biology, Leibniz Research Institute for Molecular Pharmacology, Berlin, Germany.ORCID http://orcid.org/0000-0003-3119-6993
Savvas N SavvidesUnit for Structural Biology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-3420-5947
Johan WinneDepartment of Organic and Macromolecular Chemistry, Ghent University, Ghent, Belgium.
Eugenia RussinovaDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. eurus@psb.vib-ugent.be.ORCID http://orcid.org/0000-0002-0569-1977
Ghent University · BEGhent University Hospital · BEInstitute of Science and Technology Austria · ATBulgarian Academy of Sciences · BGFreie Universität Berlin · DEUniversity of California, Riverside · USVIB-UGent Center for Plant Systems Biology · BE

Funding

European Research Council 682436
6 · The paper itself

Abstract

Clathrin-mediated endocytosis (CME) is a highly conserved and essential cellular process in eukaryotic cells, but its dynamic and vital nature makes it challenging to study using classical genetics tools. In contrast, although small molecules can acutely and reversibly perturb CME, the few chemical CME inhibitors that have been applied to plants are either ineffective or show undesirable side effects. Here, we identify the previously described endosidin9 (ES9) as an inhibitor of clathrin heavy chain (CHC) function in both Arabidopsis and human cells through affinity-based target isolation, in vitro binding studies and X-ray crystallography. Moreover, we present a chemically improved ES9 analog, ES9-17, which lacks the undesirable side effects of ES9 while retaining the ability to target CHC. ES9 and ES9-17 have expanded the chemical toolbox used to probe CHC function, and present chemical scaffolds for further design of more specific and potent CHC inhibitors across different systems.

Indexed as

ArabidopsisBenzene DerivativesClathrin Heavy ChainsEndocytosisHumansModels, MolecularMolecular StructureThiophenesBenzene DerivativesClathrin Heavy Chainsendosidin9Thiophenes

Identifiers

PMID31011214
PMCPMC7612312
OpenAlexW2939112498

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.