Evidence map›Paper›PMID 31011167›Full record

ArticleNature cell biology2019

U2AF1 mutations induce oncogenic IRAK4 isoforms and activate innate immune pathways in myeloid malignancies.

Molly A Smith, Gaurav S Choudhary, Andrea Pellagatti, Kwangmin Choi, Lyndsey C Bolanos, Tushar D Bhagat, Shanisha Gordon-Mitchell, Dagny Von Ahrens, Kith Pradhan, Violetta Steeples and 10 more

Abstract read
In one paragraph

Article in Nature cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 157 papers.

0numbers the graph read from it
0cells of the map it votes in
157citing papers in PubMed
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

157 citing papers in PubMed, 249 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Splicing-driven post-translational dysregulation: a new frontier for precision cancer medicine and immunotherapy.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  7. Review
  8. Role of alternative splicing in cancer progression.Irish journal of medical science · 2026
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Epigenetic alterations in Myeloid Malignancies.Advances in experimental medicine and biology · 2026
    Review
  15. Review
  16. Review
  17. Review
  18. Updates in low/intermediate-risk MDS.Hematology. American Society of Hematology. Education Program · 2025
    Review
  19. Article
  20. Review

97 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Molly A Smith *Division of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Gaurav S Choudhary *Albert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA.ORCID http://orcid.org/0000-0001-5365-6706
Andrea PellagattiNuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine, University of Oxford and Oxford BRC Haematology Theme, Oxford, UK.
Kwangmin ChoiDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Lyndsey C BolanosDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Tushar D BhagatAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA.
Shanisha Gordon-MitchellAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA.
Dagny Von AhrensAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA.
Kith PradhanAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA.
Violetta SteeplesNuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine, University of Oxford and Oxford BRC Haematology Theme, Oxford, UK.
Sanghyun KimDepartment of Medicine, Washington University, St. Louis, MO, USA.
Ulrich SteidlAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA.ORCID http://orcid.org/0000-0002-9458-1795
Matthew WalterDepartment of Medicine, Washington University, St. Louis, MO, USA.
Iain D C FraserLaboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institute of Health, Bethesda, MD, USA.
Aishwarya KulkarniDepartment of Electrical Engineering and Computer Science, University of Cincinnati, Cincinnati, OH, USA.
Nathan SalomonisDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Kakajan KomurovDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0003-4834-9845
Jacqueline BoultwoodNuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine, University of Oxford and Oxford BRC Haematology Theme, Oxford, UK. jacqueline.boultwood@ndcls.ox.ac.uk.ORCID http://orcid.org/0000-0002-4330-2928
Amit VermaAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, NY, USA. amit.verma@einstein.yu.edu.ORCID http://orcid.org/0000-0001-7592-7693
Daniel T StarczynowskiDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. Daniel.Starczynowski@cchmc.org.ORCID http://orcid.org/0000-0002-5771-7462
Albert Einstein College of Medicine · USCincinnati Children's Hospital Medical Center · USUniversity of Oxford · GBWashington University in St. Louis · USJohn Radcliffe Hospital · GBNational Institute of Allergy and Infectious Diseases · USUniversity of Cincinnati · US

Funding

RNAi Screening in Hematopoietic CellsZIAAI001106 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI FRASER, IAIN · 2009 to 2025
$12.4M
Analysis of Innate Immune Signaling NetworksZIAAI001107 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI FRASER, IAIN · 2009 to 2025
$11.9M
Decoding innate immune signaling in normal and myelodysplastic hematopoiesisR35HL135787 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI STARCZYNOWSKI, DANIEL · 2017 to 2022
$4.6M
Training of Surgeons for Studies of the Tumor MicroenvironmentT32CA200561 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI MCAULIFFE, JOHN · 2015 to 2024
$2.7M
Unbiased identification of spliceosome vulnerabilities across cancerR01CA226802 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI SALOMONIS, NATHAN G. · 2018 to 2022
$2.4M
Therapeutic targeting of MDS stem cellsR01HL139487 · NHLBI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STEIDL, ULRICH, VERMA, AMIT K. · 2018 to 2021
$2.1M
Mechanisms of Formation and Progression of Preleukemic Stem CellsR01CA217092 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STEIDL, ULRICH · 2017 to 2021
$2.0M
Targeting IRAK1/4 in Myelodysplastic SyndromesR01DK113639 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI STARCZYNOWSKI, DANIEL · 2017 to 2020
$1.9M
Therapeutic targeting of MicroRNA-21 in Myelodysplastic syndromesR01DK103961 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VERMA, AMIT K. · 2014 to 2017
$1.4M
Molecular Pathogenesis of MDSR01DK102759 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI STARCZYNOWSKI, DANIEL · 2014 to 2016
$701k
Aberrant Ubiquitin-Editing in the Pathogenesis of Myeloid MalignanciesF31HL132420 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI SMITH, MOLLY ANNE · 2016 to 2018
$105k
NCI NIH HHS R01 CA217092NCI NIH HHS R01 CA226802NCI NIH HHS T32 CA200561NHLBI NIH HHS F31 HL132420NHLBI NIH HHS R01 HL139487NHLBI NIH HHS R35 HL135787NIDDK NIH HHS R01 DK102759NIDDK NIH HHS R01 DK103961NIDDK NIH HHS R01 DK113639
6 · The paper itself

Abstract

Spliceosome mutations are common in myelodysplastic syndromes (MDS) and acute myeloid leukaemia (AML), but the oncogenic changes due to these mutations have not been identified. Here a global analysis of exon usage in AML samples revealed distinct molecular subsets containing alternative spliced isoforms of inflammatory and immune genes. Interleukin-1 receptor-associated kinase 4 (IRAK4) was the dominant alternatively spliced isoform in MDS and AML and is characterized by a longer isoform that retains exon 4, which encodes IRAK4-long (IRAK4-L), a protein that assembles with the myddosome, results in maximal activation of nuclear factor kappa-light-chain-enhancer of B cells (NF-κB) and is essential for leukaemic cell function. Expression of IRAK4-L is mediated by mutant U2 small nuclear RNA auxiliary factor 1 (U2AF1) and is associated with oncogenic signalling in MDS and AML. Inhibition of IRAK4-L abrogates leukaemic growth, particularly in AML cells with higher expression of the IRAK4-L isoform. Collectively, mutations in U2AF1 induce expression of therapeutically targetable 'active' IRAK4 isoforms and provide a genetic link to activation of chronic innate immune signalling in MDS and AML.

Indexed as

Alternative SplicingExonsFemaleGene Expression Regulation, NeoplasticHumansImmunity, InnateInflammationInterleukin-1 Receptor-Associated KinasesLeukemia, Myeloid, AcuteMaleMutationMyelodysplastic SyndromesProtein IsoformsSignal TransductionSpliceosomesSplicing Factor U2AFInterleukin-1 Receptor-Associated KinasesIRAK4 protein, humanProtein IsoformsSplicing Factor U2AFU2AF1 protein, human

Identifiers

PMID31011167
PMCPMC6679973
OpenAlexW2937725692

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.