Evidence map›Paper›PMID 31010849›Full record

ArticleBlood2019

Reprogramming identifies functionally distinct stages of clonal evolution in myelodysplastic syndromes.

Jasper Hsu, Andreea Reilly, Brian J Hayes, Courtnee A Clough, Eric Q Konnick, Beverly Torok-Storb, Suleyman Gulsuner, David Wu, Pamela S Becker, Siobán B Keel and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 59 citations in OpenAlex.

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  16. iPSC Models of Leukemia Come of Age.Blood cancer discovery · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Jasper HsuDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.
Andreea ReillyDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.
Brian J HayesFred Hutchinson Cancer Research Center, Seattle, WA; and.
Courtnee A CloughDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.
Eric Q KonnickDepartment of Laboratory Medicine.ORCID 0000-0001-5904-1788
Beverly Torok-StorbFred Hutchinson Cancer Research Center, Seattle, WA; and.
Suleyman GulsunerDivision of Medical Genetics, Department of Medicine.
David WuDepartment of Laboratory Medicine.
Pamela S BeckerDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.ORCID 0000-0001-6235-9463
Siobán B KeelDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.
Janis L AbkowitzDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.
Sergei DoulatovDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA.ORCID 0000-0002-1328-364X
University of Washington · USFred Hutch Cancer Center · USMedical Genetics Center · DE

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Thomas James Lynch · 1985 to 2026
$296.4M
Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 1999 to 2019
$26.0M
RESEARCH TRAINING IN HEMATOLOGYT32HL007093 · NHLBI · UNIVERSITY OF WASHINGTON · PI Janis L Abkowitz · 1985 to 2026
$13.9M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
Physiology of feline leukemia virus C receptor, FLVCRR01HL031823 · NHLBI · UNIVERSITY OF WASHINGTON · PI ABKOWITZ, JANIS L · 1985 to 2024
$9.1M
Uncovering epigenetic barriers to hematopoietic stem cell formationDP2HL147126 · NHLBI · UNIVERSITY OF WASHINGTON · PI DOULATOV, SERGEI · 2018 to 2018
$2.3M
Hematopoietic stem cells from human pluripotent stem cells and modeling of blood disordersR00HL123484 · NHLBI · UNIVERSITY OF WASHINGTON · PI DOULATOV, SERGEI · 2016 to 2018
$747k
Constructing a Stem Cell Niche - Administrative SupplementF32DK102336 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAYES, BRIAN JOSEPH · 2014 to 2017
$159k
NCI NIH HHS P01 CA077852NCI NIH HHS P30 CA015704NHLBI NIH HHS DP2 HL147126NHLBI NIH HHS R00 HL123484NHLBI NIH HHS R01 HL031823NHLBI NIH HHS T32 HL007093NIDDK NIH HHS F32 DK102336NIDDK NIH HHS U54 DK106829
6 · The paper itself

Abstract

Myeloid neoplasms, including myelodysplastic syndromes (MDS), are genetically heterogeneous disorders driven by clonal acquisition of somatic mutations in hematopoietic stem and progenitor cells (HPCs). The order of premalignant mutations and their impact on HPC self-renewal and differentiation remain poorly understood. We show that episomal reprogramming of MDS patient samples generates induced pluripotent stem cells from single premalignant cells with a partial complement of mutations, directly informing the temporal order of mutations in the individual patient. Reprogramming preferentially captured early subclones with fewer mutations, which were rare among single patient cells. To evaluate the functional impact of clonal evolution in individual patients, we differentiated isogenic MDS induced pluripotent stem cells harboring up to 4 successive clonal abnormalities recapitulating a progressive decrease in hematopoietic differentiation potential. SF3B1, in concert with epigenetic mutations, perturbed mitochondrial function leading to accumulation of damaged mitochondria during disease progression, resulting in apoptosis and ineffective erythropoiesis. Reprogramming also informed the order of premalignant mutations in patients with complex karyotype and identified 5q deletion as an early cytogenetic anomaly. The loss of chromosome 5q cooperated with

Indexed as

Cellular ReprogrammingClonal EvolutionHematopoietic Stem CellsHumansMyelodysplastic SyndromesPluripotent Stem Cells

Identifiers

PMID31010849
PMCPMC6624967
OpenAlexW2941059778

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.