Evidence map›Paper›PMID 31010245›Full record

ArticleCells2019

Humoral Response to the HIV-1 Envelope V2 Region in a Thai Early Acute Infection Cohort.

Hung V Trinh, Neelakshi Gohain, Peter T Pham, Christopher Hamlin, Hongshuo Song, Eric Sanders-Buell, Meera Bose, Leigh A Eller, Swati Jain, Gherman Uritskiy and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cells, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Hung V TrinhU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. htrinh@hivresearch.org.
Neelakshi GohainU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. ngohain@hivresearch.org.
Peter T PhamU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. ppham@hivresearch.org.
Christopher HamlinU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. christopher.hamlin@nih.gov.
Hongshuo SongU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. hsong@hivresearch.org.
Eric Sanders-BuellU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. esandersbuell@hivresearch.org.
Meera BoseU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. mbose@hivresearch.org.
Leigh A EllerU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. leller@hivresearch.org.
Swati Jain
Gherman Uritskiy
Venigalla B Rao
Sodsai TovanabutraU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. Stovanabutra@hivresearch.org.
Nelson L MichaelU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. nmichael@hivresearch.org.
Merlin L RobbU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. mrobb@hivresearch.org.
M Gordon JoyceU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. gjoyce@hivresearch.org.
Mangala RaoU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA. mrao@hivresearch.org.
Henry M. Jackson Foundation · USWalter Reed Army Institute of Research · US

Funding

FILARIASIS REPOSITORY RESEARCH SERVICEN01AI002642 · NIAID · UNIVERSITY OF GEORGIA (UGA) · PI MC CALL, JOHN W · 1985 to 1987
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6 · The paper itself

Abstract

Reduced risk of HIV-1 infection correlated with antibody responses to the envelope variable 1 and 2 regions in the RV144 vaccine trial. To understand the relationship between antibody responses, V2 sequence, and structure, plasma samples (n = 16) from an early acute HIV-1 infection cohort from Thailand infected with CRF01_AE strain were analyzed for binding to V2 peptides by surface plasmon resonance. Five participants with a range of V2 binding responses at week 24 post-infection were further analyzed against a set of four overlapping V2 peptides that were designed based on envelope single-genome amplification. Antibody responses that were relatively consistent over the four segments of the V2 region or a focused response to the C-strand (residues 165-186) of the V2 region were observed. Viral escape in the V2 region resulted in significantly reduced antibody binding. Structural modeling indicated that the C-strand and the sites of viral variation were highly accessible in the open conformation of the HIV-1 Env trimer. V2 residues, 165-186 are preferentially targeted during acute infection. Residues 169-184 were also preferentially targeted by the protective immune response in the RV144 trial, thus emphasizing the importance of these residues for vaccine design.

Indexed as

AIDS VaccinesAmino Acid SequenceAntibodies, NeutralizingCohort StudiesHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHIV SeropositivityHumansImmunity, HumoralAIDS VaccinesAntibodies, NeutralizingHIV AntibodiesHIV Envelope Protein gp120acute infectionCRF01_AEHIV-1immune responseRV217 prospective studysingle genome amplification (SGA)structural biologysurface plasmon resonance (SPR)transmitted/founder (T/F) virusV2 region

Identifiers

PMID31010245
PMCPMC6523213
OpenAlexW2937155623

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.