Evidence map›Paper›PMID 31009993›Full record

ArticleMolecules (Basel, Switzerland)2019

Effect of Protein Conformation and AMP Protonation State on Fireflies' Bioluminescent Emission.

Cristina Garcia-Iriepa, Isabelle Navizet

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Cristina Garcia-IriepaLaboratoire Modélisation et Simulation Multi Échelle, Université Paris-Est, MSME UMR 8208 CNRS, UPEM, 5 bd Descartes, 77454 Marne-la-Vallée, France. cristina.garciairiepa@u-pem.fr.ORCID 0000-0002-7577-8242
Isabelle NavizetLaboratoire Modélisation et Simulation Multi Échelle, Université Paris-Est, MSME UMR 8208 CNRS, UPEM, 5 bd Descartes, 77454 Marne-la-Vallée, France. isabelle.navizet@u-pem.fr.ORCID 0000-0002-2158-6157

Funding

Agence Nationale de la Recherche ANR-16- CE29-0013Fundación Ramón Areces Postdoctoral grant
6 · The paper itself

Abstract

The emitted color in fireflies' bioluminescent systems depends on the beetle species the system is extracted from and on different external factors (pH, temperature…) among others. Controlling the energy of the emitted light (i.e., color) is of crucial interest for the use of such bioluminescent systems. For instance, in the biomedical field, red emitted light is desirable because of its larger tissue penetration and lower energies. In order to investigate the influence of the protein environment and the AMP protonation state on the emitted color, the emission spectra of the phenolate-keto and phenolate-enol oxyluciferin forms have been simulated by means of MD simulations and QM/MM calculations, considering: two different protein conformations (with an open or closed C-terminal domain with respect to the N-terminal) and two protonation states of AMP. The results show that the emission spectra when considering the protein characterized by a closed conformation are blue-shifted compared to the open conformation. Moreover, the complete deprotonation of AMP phosphate group (AMP

Indexed as

LuminescenceProtein ConformationAdenosine MonophosphateAnimalsFirefliesHydrogen BondingMolecular Dynamics SimulationMolecular StructureSpectrum AnalysisAdenosine Monophosphatebioluminescenceemission spectrafirefliesMD simulationsQM/MM

Identifiers

PMID31009993
PMCPMC6514813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.